Browse Element(s) Details


Os.55301.1.S1_x_at

Description gb:AK107828.1
DB_XREF= gi:32993037
TID=Os.55301.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-G09, full insert sequence.
FL= gb:AK107828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2948010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29460Os.2364.1.S1_at11/119+17902178..17903900Homeobox associated leucine zipper family protein, expressed
LOC_Os09g29470Os.17010.1.S1_at11/119+17917776..17922862expressed protein
LOC_Os09g29480Os.49579.1.S1_at11/119+17928688..17931489expressed protein
LOC_Os09g29480Os.55301.1.S1_x_at10/119+17928688..17931489expressed protein
LOC_Os09g29490Os.8139.1.S1_at11/119+17931692..17934813Peroxidase 17 precursor, putative, expressed
LOC_Os09g29500NANA9+17942680..17945479retrotransposon protein, putative, unclassified
LOC_Os09g29510OsAffx.30080.1.S1_at11/119+17948935..17953034Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001887biological_processselenium metabolism
GO:0006790biological_processsulfur metabolism
GO:0018283biological_processiron incorporation into metallo-sulfur cluster
GO:0009507cellular_componentchloroplast
GO:0009000molecular_functionselenocysteine lyase activity
GO:0031071molecular_functioncysteine desulfurase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55301.1.S1_x_at--125--6831Chr09:17930144..17930168 (25 bp)
GTTTAGCCCGAGTGGTCGCCGTCGA
LOC_Os09g29480
Os.55301.1.S1_x_at--364--3771NONE
CTCTCCCTGGTTTTGCAGTACTGGA
NONE
Os.55301.1.S1_x_at--1076--3411Chr09:17931221..17931245 (25 bp)
CAGACTTGCCTGACGGTTTCCGTGT
LOC_Os09g29480
Os.55301.1.S1_x_at--1125--731Chr09:17931260..17931284 (25 bp)
ATGTAGGCCCCGAGCTCACAATAGA
LOC_Os09g29480
Os.55301.1.S1_x_at--202--1271Chr09:17931305..17931329 (25 bp)
AGATAGCTGATCTCTGCTTTTCCAG
LOC_Os09g29480
Os.55301.1.S1_x_at--479--6491Chr09:17931342..17931366 (25 bp)
GATAGCTCTCACTGCTTTTCTTAAA
LOC_Os09g29480
Os.55301.1.S1_x_at--16--851Chr09:17931378..17931402 (25 bp)
ATGGACAATACATTGCACCTCGCCA
LOC_Os09g29480
Os.55301.1.S1_x_at--494--5091Chr09:17931392..17931416 (25 bp)
GCACCTCGCCATCTTGTATATACGA
LOC_Os09g29480
Os.55301.1.S1_x_at--800--631Chr09:17931419..17931443 (25 bp)
ATGCATGTGTGTTGTCGGTTTGTCT
LOC_Os09g29480
Os.55301.1.S1_x_at--152--6871Chr09:17931436..17931460 (25 bp)
GTTTGTCTTTCTACCATGCTTATTT
LOC_Os09g29480
Os.55301.1.S1_x_at--989--6611Chr09:17931465..17931489 (25 bp)
GTTGGTGTTGGAATGCTTTTTTGAC
LOC_Os09g29480
Target Sequence 
GTTTAGCCCGAGTGGTCGCCGTCGACGAGATGCGGGAGGCGCCGTGCAAGGCGTCGGTCCTGTTCCCGCGGAGCGGCGGC
AACATCCACTCCCTCACCGCCGTCACGCCGTGCGCGCTCCTCGACGTGCTAGCGCCGCCCTACGCCGAGGACCTCGGCCG
GCCGTCCACCTACTTCTCCGACATTCCCATCCCTTCTCTCCCTGGTTTTGCAGTACTGGAAGAGGCAGACTTGCCTGACG
GTTTCCGTGTTGCAGGGGCCCCATATGTAGGCCCCGAGCTCACAATAGACATGGACAGCATGTATAATTAGATAGCTGAT
CTCTGCTTTTCCAGAGTATCAGATCAGATAGCTCTCACTGCTTTTCTTAAAGTAGCATTTGCATGGACAATACATTGCAC
CTCGCCATCTTGTATATACGATTATGCATGTGTGTTGTCGGTTTGTCTTTCTACCATGCTTATTTACCAGTTGGTGTTGG
AATGCTTTTTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55301.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis