Browse Element(s) Details


Os.55319.1.S1_at

Description gb:AK107863.1
DB_XREF= gi:32993072
TID=Os.55319.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-B11, full insert sequence.
FL= gb:AK107863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1431011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14290OsAffx.26879.1.S1_at11/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_a_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_x_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.1.S1_x_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14300Os.17169.1.S1_at2/115+8013425..8018706ubiquitin-conjugating enzyme E2, putative, expressed
LOC_Os05g14310Os.55319.1.S1_at11/115+8026103..8026901expressed protein
LOC_Os05g14320Os.40626.2.S1_x_at9/115+8032834..8037237transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g14320Os.40626.1.S1_at7/115+8032834..8037237transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g14330Os.18412.1.S1_a_at1/115+8038722..8043362retrotransposon protein, putative, unclassified
LOC_Os05g14340NANA5+8045375..8051530retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55319.1.S1_at--967--8011Chr05:8026516..8026540 (25 bp)
GGAGGTTCAGTTGGAGCCCATGTCC
LOC_Os05g14310
Os.55319.1.S1_at--926--7851Chr05:8026575..8026599 (25 bp)
GGTTCACATTGGAGTACGACCACGA
LOC_Os05g14310
Os.55319.1.S1_at--168--9531Chr05:8026673..8026697 (25 bp)
TCTCTTCCTTTTTCTGCGTTGCACG
LOC_Os05g14310
Os.55319.1.S1_at--127--1831Chr05:8026695..8026719 (25 bp)
ACGCCAGGTGCTTGCGGAAAAGCCT
LOC_Os05g14310
Os.55319.1.S1_at--394--6211Chr05:8026722..8026746 (25 bp)
GAGGCTTTACGCGTGCTTCAATAAA
LOC_Os05g14310
Os.55319.1.S1_at--669--2391Chr05:8026744..8026768 (25 bp)
AAACTCTTTAGCTGTTGATCACTGA
LOC_Os05g14310
Os.55319.1.S1_at--43--8851Chr05:8026759..8026783 (25 bp)
TGATCACTGATCATGGATGCCCATT
LOC_Os05g14310
Os.55319.1.S1_at--1112--9351Chr05:8026788..8026812 (25 bp)
TCGAACCTGATTACCATTGTCCTAA
LOC_Os05g14310
Os.55319.1.S1_at--475--3151Chr05:8026832..8026856 (25 bp)
AATTCTACTGCAGCATCGTGGGCAT
LOC_Os05g14310
Os.55319.1.S1_at--305--9431Chr05:8026847..8026871 (25 bp)
TCGTGGGCATGCATTGTTGGTTTAT
LOC_Os05g14310
Os.55319.1.S1_at--60--8471Chr05:8026877..8026901 (25 bp)
TGGCGTTTCCACATTTTAACTGCAC
LOC_Os05g14310
Target Sequence 
GGAGGTTCAGTTGGAGCCCATGTCCGTCGATGACGTCGCGGCGGGGAAGGAGTGGGAGGGGTTCACATTGGAGTACGACC
ACGAGCACGACCTCGACGCCGATGATGAGGATGCCGCGGAGTAGGAGAAGAAGAAGTAGCGGCGCTGGAGGTGGGATTCT
CTTCCTTTTTCTGCGTTGCACGCCAGGTGCTTGCGGAAAAGCCTGTGAGGCTTTACGCGTGCTTCAATAAACTCTTTAGC
TGTTGATCACTGATCATGGATGCCCATTTGGGTCGAACCTGATTACCATTGTCCTAAACAATTTTAGTCAAAACCTAATT
CTACTGCAGCATCGTGGGCATGCATTGTTGGTTTATTGGAATGGCGTTTCCACATTTTAACTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis