Browse Element(s) Details


OsAffx.26879.1.S1_at

Description tigr:9633.m01248
TID=OsAffx.26879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1429011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14240Os.37723.1.S1_at11/115+7980002..7982306Aquaporin TIP3.1, putative, expressed
LOC_Os05g14250NANA5+7983088..7983747hypothetical protein
LOC_Os05g14260NANA5+7985133..7986565Peroxidase family protein
LOC_Os05g14270Os.23847.1.S1_at11/115+7993622..7996781expressed protein
LOC_Os05g14280OsAffx.14687.1.S1_at11/115+7997274..8000020hypothetical protein
LOC_Os05g14290OsAffx.26879.1.S1_at11/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_a_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_x_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.1.S1_x_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14300Os.17169.1.S1_at2/115+8013425..8018706ubiquitin-conjugating enzyme E2, putative, expressed
LOC_Os05g14310Os.55319.1.S1_at11/115+8026103..8026901expressed protein
LOC_Os05g14320Os.40626.2.S1_x_at9/115+8032834..8037237transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g14320Os.40626.1.S1_at7/115+8032834..8037237transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26879.1.S1_at--596--2571Chr05:8006990..8007121 (25 bp)
AACGGCGACATAACGTCCTGACGGG
LOC_Os05g14290
OsAffx.26879.1.S1_at--232--5111Chr05:8006954..8006978 (25 bp)
GCACTGTGCTGGTGTTCGATACGGC
LOC_Os05g14290
OsAffx.26879.1.S1_at--602--311Chr05:8006936..8006960 (25 bp)
ATACGGCGGCAGAGGAGTTCCGCAC
LOC_Os05g14290
OsAffx.26879.1.S1_at--149--5711Chr05:8006895..8006919 (25 bp)
GACTACTCCCAAGATGCCGACTGGA
LOC_Os05g14290
OsAffx.26879.1.S1_at--1051--1571Chr05:8006864..8006888 (25 bp)
AGCTCAACGGAGTACAGGGCACCAT
LOC_Os05g14290
OsAffx.26879.1.S1_at--770--10611Chr05:8006833..8006857 (25 bp)
TTCGTCGTACGACGCAGACGGCGAC
LOC_Os05g14290
OsAffx.26879.1.S1_at--469--8111Chr05:8006665..8006689 (25 bp)
GGACGCACTGCTCCGGTCAAGTCAG
LOC_Os05g14290
OsAffx.26879.1.S1_at--194--7871Chr05:8006626..8006650 (25 bp)
GGTTTACAACCTCAAAAGACTCAAG
LOC_Os05g14290
OsAffx.26879.1.S1_at--736--6251Chr05:8006553..8006577 (25 bp)
GATGGTGACGATGTCTCCTCGCGAC
LOC_Os05g14290
OsAffx.26879.1.S1_at--755--9331Chr05:8006535..8006559 (25 bp)
TCGCGACGCAACATGTCTACCAGGA
LOC_Os05g14290
OsAffx.26879.1.S1_at--220--8671Chr05:8006522..8006546 (25 bp)
TGTCTACCAGGAGAGCTTCGTTTCT
LOC_Os05g14290
Target Sequence 
AACGGCGACATAACGTCCTGACGGGGGAGGTGTTCCGCACTGTGCTGGTGTTCGATACGGCGGCAGAGGAGTTCCGCACG
ATGCGCAGGCCGTGCGACTACTCCCAAGATGCCGACTGGACCAGCCAGCTCAACGGAGTACAGGGCACCATGGCCGCTTC
GTCGTACGACGCAGACGGCGACGGAGTGTTGGCGCTGTGGCTGCTCCGGGACTACGACGAGGAGGCATGGGAATGCGTGT
ACCGCGTCGCCGCCGGGTTCCTCGGCGACGTGGCCAGGATGATGGGGTTCTTCGTCGCCCACATGAGCGACGACAGCGGT
GGTGGGGACGCACTGCTCCGGTCAAGTCAGGGGCATCGGTATGGGGTTTACAACCTCAAAAGACTCAAGAGGGGCGAGGT
GGTGGCCGCCGACAGGGAGTTCGGCGGTGACGACGACGATGGTGACGATGTCTCCTCGCGACGCAACATGTCTACCAGGA
GAGCTTCGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis