Browse Element(s) Details


Os.37723.1.S1_at

Description gb:AK072531.1
DB_XREF= gi:32982554
TID=Os.37723.1
CNT=44
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.37723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131O04, full insert sequence.
FL= gb:AK072531.1 gb:AK060193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1424011/11Aquaporin TIP3.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14220OsAffx.26878.1.S1_at11/115+7952449..7955131Protein kinase domain containing protein
LOC_Os05g14220Os.4820.1.S1_at1/115+7952449..7955131Protein kinase domain containing protein
LOC_Os05g14230NANA5+7960254..7960508hypothetical protein
LOC_Os05g14240Os.37723.1.S1_at11/115+7980002..7982306Aquaporin TIP3.1, putative, expressed
LOC_Os05g14250NANA5+7983088..7983747hypothetical protein
LOC_Os05g14260NANA5+7985133..7986565Peroxidase family protein
LOC_Os05g14270Os.23847.1.S1_at11/115+7993622..7996781expressed protein
LOC_Os05g14280OsAffx.14687.1.S1_at11/115+7997274..8000020hypothetical protein
LOC_Os05g14290OsAffx.26879.1.S1_at11/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_a_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_x_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.1.S1_x_at1/115+8006476..8008441hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009740biological_processgibberellic acid mediated signaling
GO:0018987biological_processosmoregulation
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0015200molecular_functionmethylammonium transporter activity
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37723.1.S1_at--1159--7271Chr05:7981790..7981814 (25 bp)
GTGCCAACACCATCGCTGGTGGCAA
LOC_Os05g14240
Os.37723.1.S1_at--847--6111Chr05:7981871..7981895 (25 bp)
GAGTGTGGACCCACCACTGGATCTA
LOC_Os05g14240
Os.37723.1.S1_at--198--9351Chr05:7981925..7981949 (25 bp)
TCGCTGGGCTGGTCTATGAGTCATT
LOC_Os05g14240
Os.37723.1.S1_at--849--691Chr05:7981940..7981964 (25 bp)
ATGAGTCATTGTTCTTGGTCAAGAG
LOC_Os05g14240
Os.37723.1.S1_at--184--6191Chr05:7981962..7981986 (25 bp)
GAGGACCCATGAGCCTCTGCTAGAT
LOC_Os05g14240
Os.37723.1.S1_at--63--3151Chr05:7981987..7982011 (25 bp)
AATTCCTTTTAGTAGTCTGGTCTCT
LOC_Os05g14240
Os.37723.1.S1_at--259--7191Chr05:7982001..7982025 (25 bp)
GTCTGGTCTCTTTAGATGGTTTCAT
LOC_Os05g14240
Os.37723.1.S1_at--425--4931Chr05:7982062..7982086 (25 bp)
GCTTGTGCAGCTTGTAGGCCTGTAA
LOC_Os05g14240
Os.37723.1.S1_at--396--10211Chr05:7982102..7982126 (25 bp)
TATTTTCTTTTTGCCCTCGAGGATT
LOC_Os05g14240
Os.37723.1.S1_at--1059--8571Chr05:7982208..7982232 (25 bp)
TGGTCTGTTGTAAATCGGCGAATGC
LOC_Os05g14240
Os.37723.1.S1_at--406--9451Chr05:7982222..7982246 (25 bp)
TCGGCGAATGCCATGTGGTTTTGAA
LOC_Os05g14240
Target Sequence 
GTGCCAACACCATCGCTGGTGGCAACTTCTCCGGCGCGTCAATGAACCCGGCCCGGTCATTTGGGCCGGCGCTGGCCACT
GGAGTGTGGACCCACCACTGGATCTACTGGCTCGGGCCGCTGATTGGCGGGCCTCTCGCTGGGCTGGTCTATGAGTCATT
GTTCTTGGTCAAGAGGACCCATGAGCCTCTGCTAGATAATTCCTTTTAGTAGTCTGGTCTCTTTAGATGGTTTCATTTGC
AGAATGCATATATTGCCAGGTAGTAATAAGATGCTTGTGCAGCTTGTAGGCCTGTAAGGGCTGTATAATTATTATTTTCT
TTTTGCCCTCGAGGATTTTATCAACGTTGATAATCAGCCATGTAAAAAGATTGTTTGGGATATGATTTTTTTGTTAGTAT
AAAATGTAGTNCGGTAGTTGGTCTGTTGTAAATCGGCGAATGCCATGTGGTTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis