Browse Element(s) Details


OsAffx.14687.1.S1_at

Description tigr:9633.m01247
TID=OsAffx.14687.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1428011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14240Os.37723.1.S1_at11/115+7980002..7982306Aquaporin TIP3.1, putative, expressed
LOC_Os05g14250NANA5+7983088..7983747hypothetical protein
LOC_Os05g14260NANA5+7985133..7986565Peroxidase family protein
LOC_Os05g14270Os.23847.1.S1_at11/115+7993622..7996781expressed protein
LOC_Os05g14280OsAffx.14687.1.S1_at11/115+7997274..8000020hypothetical protein
LOC_Os05g14290OsAffx.26879.1.S1_at11/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_a_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_x_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.1.S1_x_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14300Os.17169.1.S1_at2/115+8013425..8018706ubiquitin-conjugating enzyme E2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14687.1.S1_at--91--8891Chr05:7997991..7998015 (25 bp)
TGAGGAATATCCTAGCTATACCGCT
LOC_Os05g14280
OsAffx.14687.1.S1_at--920--7351Chr05:7997783..7997807 (25 bp)
GTGAAGCACTTCCTCTGGCGTTTTG
LOC_Os05g14280
OsAffx.14687.1.S1_at--553--2231Chr05:7997755..7997779 (25 bp)
ACAATACCCTGCCACTGCGCATGAA
LOC_Os05g14280
OsAffx.14687.1.S1_at--686--3491Chr05:7997715..7997739 (25 bp)
CATGGAGATTGACACACGATGCCCT
LOC_Os05g14280
OsAffx.14687.1.S1_at--756--3871Chr05:7997692..7997716 (25 bp)
CTGTCTGCCATCGTCTGAATGAGGA
LOC_Os05g14280
OsAffx.14687.1.S1_at--679--7551Chr05:7997665..7997689 (25 bp)
GTGGCCACTGCTTCTTCAAATGCAA
LOC_Os05g14280
OsAffx.14687.1.S1_at--222--3451Chr05:7997577..7997601 (25 bp)
CAGTTCTGCTTTGGATGTGTGCAAA
LOC_Os05g14280
OsAffx.14687.1.S1_at--368--6471Chr05:7997531..7997555 (25 bp)
GATAAAATGCTGACCACTGTGCTGT
LOC_Os05g14280
OsAffx.14687.1.S1_at--352--8931Chr05:7997521..7997545 (25 bp)
TGACCACTGTGCTGTTTCTTTGGAA
LOC_Os05g14280
OsAffx.14687.1.S1_at--1082--7851Chr05:7997415..7997439 (25 bp)
GGTTTCTGAAACTTCCCTGTTGAGC
LOC_Os05g14280
OsAffx.14687.1.S1_at--293--2272Chr08:8521859..8521883 (25 bp)
AAATCTCGACCAAACGTTCAAGCGC
NONE
Target Sequence 
TGAGGAATATCCTAGCTATACCGCTGAATATGGGGTCAGAAGATTTTGCAGCATGGCAGGTGAAGCACTTCCTCTGGCGT
TTTGCCCACAATACCCTGCCACTGCGCATGAACATTGACAGAAGAGGCATGGAGATTGACACACGATGCCCTGTCTGCCA
TCGTCTGAATGAGGATGGTGGCCACTGCTTCTTCAAATGCAAATATGTTAAAGCTGGCTGGAGAGTGATGAATTTGAAGC
ATATCAGGTTAGAGCTGATGCAGTACAGTTCTGCTTTGGATGTGTGCAAACATATTCTGAATATGAAGGAGGATAAAATG
CTGACCACTGTGCTGTTTCTTTGGAACTGGTGGGATGCAAGGAATAAAGTAAACGCTGGGGAAGATCGCAGATCAGCTGA
GCAAGTGTATGACAGAGTCATGAGGATGGTTTCTGAAACTTCCCTGTTGAGCCCGGCCAAATCTCGACCAAACGTTCAAG
CGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis