Browse Element(s) Details


Os.23847.1.S1_at

Description gb:AK071646.1
DB_XREF= gi:32981669
TID=Os.23847.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106B01, full insert sequence.
FL= gb:AK071646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1427011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14240Os.37723.1.S1_at11/115+7980002..7982306Aquaporin TIP3.1, putative, expressed
LOC_Os05g14250NANA5+7983088..7983747hypothetical protein
LOC_Os05g14260NANA5+7985133..7986565Peroxidase family protein
LOC_Os05g14270Os.23847.1.S1_at11/115+7993622..7996781expressed protein
LOC_Os05g14280OsAffx.14687.1.S1_at11/115+7997274..8000020hypothetical protein
LOC_Os05g14290OsAffx.26879.1.S1_at11/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_a_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.2.S1_x_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14290Os.39942.1.S1_x_at1/115+8006476..8008441hypothetical protein
LOC_Os05g14300Os.17169.1.S1_at2/115+8013425..8018706ubiquitin-conjugating enzyme E2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23847.1.S1_at--712--6251Chr05:7995840..7995864 (25 bp)
GATGGTGATCACAGTCCAAAACCGG
LOC_Os05g14270
Os.23847.1.S1_at--9--8471Chr05:7995906..7995930 (25 bp)
TGGCCCTTACTCTCTTGAACACATG
LOC_Os05g14270
Os.23847.1.S1_at--769--391Chr05:7995946..7995970 (25 bp)
ATCACCACTGCAAGCAGGCAGCTGA
LOC_Os05g14270
Os.23847.1.S1_at--969--10771Chr05:7995977..7996001 (25 bp)
TTGTTGAGCTTGAGCCACCCTTGGA
LOC_Os05g14270
Os.23847.1.S1_at--545--971Chr05:7996053..7996075 (23 bp)
AGGAGCTAGCATGCAAGATCAGGGC
LOC_Os05g14270
Os.23847.1.S1_at--175--4071Chr05:7996406..7996430 (25 bp)
CGAGGTGATGATCATGGTTTTCCAA
LOC_Os05g14270
Os.23847.1.S1_at--763--8031Chr05:7996538..7996562 (25 bp)
GGAGTGCGTGTTGTCATTGTGATCA
LOC_Os05g14270
Os.23847.1.S1_at--780--9591Chr05:7996551..7996575 (25 bp)
TCATTGTGATCATAGCTTGCGGAGC
LOC_Os05g14270
Os.23847.1.S1_at--339--2891Chr05:7996596..7996620 (25 bp)
AAGGGTAGCAGGACATGTACATTTA
LOC_Os05g14270
Os.23847.1.S1_at--887--9751Chr05:7996661..7996685 (25 bp)
TAATGCAACTGCTATACACCTCCAT
LOC_Os05g14270
Os.23847.1.S1_at--513--1911Chr05:7996736..7996760 (25 bp)
ACGTGTGTCCGAGTTTATCTTAGAA
LOC_Os05g14270
Target Sequence 
GATGGTGATCACAGTCCAAAACCGGAGCAAGAAGCGGTCGATGCCGAAGNGTNGTCGCGCNGCCATTGGCCCTTACTCTC
TTGAACACATGCATCCCCATGTNTGCATCACCACTGCAAGCAGGCAGCTGAGAGAGCTTGTTGAGCTTGAGCCACCCTTG
GATTNGTTTGTGTTTGTAGGACAAGTTGATATCAAGAGACCAAATGTGAGGGGAGGAGCTAGCATGCAAGATCAGGGCNC
AAGCGACAGTAAAACGAAAAATGAGATGGTTTNTGCTCGAGGTGATGATCATGGTTTTCCAATATTGGANGGGCGGTTGA
TTAATCAGGGAGTGCGTGTTGTCATTGTGATCATAGCTTGCGGAGCAATATTTNTGAACAACAGATAAGGGTAGCAGGAC
ATGTACATTTAGATTGTGTGTGTGTGTTTTTCTTTTTCAAGTTTCAGTAAGTAATGCAACTGCTATACACCTCCATCCCT
AAAAAAATTAACTTCCGAGAATGAATNTAAACAACAAAGTGAACAAACGTGTGTCCGAGTTTATCTTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis