Browse Element(s) Details


Os.55362.1.S1_at

Description gb:AK107946.1
DB_XREF= gi:32993155
TID=Os.55362.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B06, full insert sequence.
FL= gb:AK107946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7126211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71230Os.12071.1.S1_at11/111+41541160..41543918Nascent polypeptide-associated complex alpha subunit-like protein 3, putative, expressed
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed
LOC_Os01g71250Os.28979.2.S1_x_at11/111+41554233..41556655expressed protein
LOC_Os01g71250Os.28979.1.S1_at11/111+41554233..41556655expressed protein
LOC_Os01g71256Os.33291.1.S1_a_at10/111+41557703..41562435expressed protein
LOC_Os01g71262Os.55362.1.S1_at11/111+41563261..41565644expressed protein
LOC_Os01g71270Os.48006.1.S1_at11/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71270Os.12402.2.S1_x_at1/111+41569316..41570686Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os01g71280Os.11390.1.S1_at10/111+41572437..41576747Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g71300Os.57405.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.57001.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.50480.1.S1_at11/111+41578082..41599153Esterase D, putative, expressed
LOC_Os01g71300Os.18519.1.S1_at10/111+41578082..41599153Esterase D, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55362.1.S1_at--485--3651Chr01:41564040..41564064 (25 bp)
CTTCTCTGCCCTCTAGAGGATCTAC
LOC_Os01g71262
Os.55362.1.S1_at--248--8791Chr01:41563580..41563604 (25 bp)
TGTTAGCCTCTAATTGTAAACCATC
LOC_Os01g71262
Os.55362.1.S1_at--107--9871Chr01:41563547..41563571 (25 bp)
TACGGCGCCCCATGGACAGAAGGAC
LOC_Os01g71262
Os.55362.1.S1_at--1049--8091Chr01:41563526..41563550 (25 bp)
GGACCTGATTGGACGATTTGCTATT
LOC_Os01g71262
Os.55362.1.S1_at--649--8111Chr01:41563516..41563540 (25 bp)
GGACGATTTGCTATTTGCGAATTGT
LOC_Os01g71262
Os.55362.1.S1_at--862--9691Chr01:41563448..41563472 (25 bp)
TCACATTATCTAGTGCCCATGCAAT
LOC_Os01g71262
Os.55362.1.S1_at--476--4551Chr01:41563434..41563458 (25 bp)
GCCCATGCAATTGATGTTCACTTGT
LOC_Os01g71262
Os.55362.1.S1_at--1056--8671Chr01:41563412..41563436 (25 bp)
TGTGTTTATGAGCAATCCGTGATAT
LOC_Os01g71262
Os.55362.1.S1_at--99--6651Chr01:41563328..41563352 (25 bp)
GTTGTTCATCATCTGGTTAGTAAGT
LOC_Os01g71262
Os.55362.1.S1_at--233--6551Chr01:41563296..41563320 (25 bp)
GATTACTATCCGCTATGTGGCAAGT
LOC_Os01g71262
Os.55362.1.S1_at--589--7531Chr01:41563280..41563304 (25 bp)
GTGGCAAGTTCTACCTTTACTTAGA
LOC_Os01g71262
Target Sequence 
CTTCTCTGCCCTCTAGAGGATCTACTTCTATGATGGACAGCACATCAAGGAAACGAGAATCAAATGGATCTGCATTTCAA
GACCCACGCAGTAAATTTCCAAGGGTTCAATCGGGACAATCTCGTGGTGCCAGGATCGCTGCTGGGAACACGTTAGTTCC
ACCACAGCTTAGTGGAAGGAGCAACGTTGTCACTGAAGATATGACCAAGTTGTTTGTGGCTAGACGCAAAGAGTAGTGCT
GATGTTTTTGTTAGCCTCTAATTGTAAACCATCAACGAATCTACGGCGCCCCATGGACAGAAGGACCTGATTGGACGATT
TGCTATTTGCGAATTGTGATCTATAATCCTAGACAGCTGGNATTGGGAATGCTCTCTTTTTTCACATTATCTAGTGCCCA
TGCAATTGATGTTCACTTGTGTTTATGAGCAATCCGTGATATGTTAAAGCATGTGACAGTGTTAGGAGAACTAGAAACTT
GTCTATTCTTAAGAACTAGATGTTGTTCATCATCTGGTTAGTAAGTAGTAATGGATTACTATCCGCTATGTGGCAAGTTC
TACCTTTACTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis