Browse Element(s) Details


Os.55376.1.S1_at

Description gb:AK107972.1
DB_XREF= gi:32993181
TID=Os.55376.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-D08, full insert sequence.
FL= gb:AK107972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0136011/11expressed protein
LOC_Os02g049601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01340OsAffx.29729.1.S1_at1/113+238751..240393transposon protein, putative, unclassified
LOC_Os03g01350Os.10303.1.S2_at11/113+242972..244443hypothetical protein
LOC_Os03g01350Os.10303.1.S3_at7/113+242972..244443hypothetical protein
LOC_Os03g01360Os.9117.1.S1_at11/113+245979..255782expressed protein
LOC_Os03g01360OsAffx.24932.2.S1_x_at11/113+245979..255782expressed protein
LOC_Os03g01360Os.55376.1.S1_at11/113+245979..255782expressed protein
LOC_Os03g01380NANA3+259910..262240retrotransposon protein, putative, unclassified
LOC_Os03g01390OsAffx.828.1.S1_x_at1/113+263280..265145transposon protein, putative, unclassified
LOC_Os03g01400NANA3+267139..268305retrotransposon protein, putative, unclassified
LOC_Os03g01410NANA3+272015..273263Leucine Rich Repeat family protein
LOC_Os03g01420Os.18484.1.S1_at5/113+274095..276245expressed protein
LOC_Os03g01430OsAffx.24934.1.S1_at11/113+280283..281740hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55376.1.S1_at--989--1293Chr03:248831..248855 (25 bp)
AGATGACGATGCCTGTTGGTGTTCA
LOC_Os03g01360
Os.55376.1.S1_at--867--7673Chr03:248901..248925 (25 bp)
GGGTTGAATCCATTTGTCTGCACTT
LOC_Os03g01360
Os.55376.1.S1_at--359--7174Chr03:248916..248940 (25 bp)
GTCTGCACTTGGTTTGGATTGGTTT
LOC_Os03g01360
Os.55376.1.S1_at--476--32Chr03:248933..248957 (25 bp)
ATTGGTTTGGGCTTGCTCTGTGAGT
LOC_Os03g01360
Os.55376.1.S1_at--1097--4673Chr03:249040..249064 (25 bp)
GCGGTTTTGGTCTGGATCTCAGTCC
LOC_Os03g01360
Os.55376.1.S1_at--415--7975Chr03:249053..249077 (25 bp)
GGATCTCAGTCCATTAGCAGGCTTA
LOC_Os03g01360
Os.55376.1.S1_at--153--6991Chr03:249081..249105 (25 bp)
GTACCGAATCTAGTTCATTCCTCTT
LOC_Os03g01360
Os.55376.1.S1_at--279--4291Chr03:249100..249124 (25 bp)
CCTCTTTTTAAATTGCTATCCGGCA
LOC_Os03g01360
Os.55376.1.S1_at--1049--8771Chr03:249144..249168 (25 bp)
TGTTTAGCTATCTCAGAACTCTGGG
LOC_Os03g01360
Os.55376.1.S1_at--50--7691Chr03:249166..249190 (25 bp)
GGGTTCAGCCCATATTCGATAAGAT
LOC_Os03g01360
Os.55376.1.S1_at--762--131Chr03:249189..249213 (25 bp)
ATTAAACCTGGTCTATCTCCTGTTC
LOC_Os03g01360
Target Sequence 
AGATGACGATGCCTGTTGGTGTTCAGAGTAATATTGTGGATTTCCTTTGGGTTGGAAATGGGTTGAGAATGGGTTGAATC
CATTTGTCTGCACTTGGTTTGGATTGGTTTGGGCTTGCTCTGTGAGTGGATTGGATTGGTTTGGTTTCTGCAAACTATGA
ATTGAATTGGATTGGTTTAGAAGTGTACTATAGAGACAAGTGAACTGGGGCGGTTTTGGTCTGGATCTCAGTCCATTAGC
AGGCTTAGATGTACCGAATCTAGTTCATTCCTCTTTTTAAATTGCTATCCGGCAGAAAATTTCTCAATCTGTATGTTTAG
CTATCTCAGAACTCTGGGTTCAGCCCATATTCGATAAGATTAAACCTGGTCTATCTCCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis