Browse Element(s) Details


Os.55379.1.S1_x_at

Description gb:AK107979.1
DB_XREF= gi:32993188
TID=Os.55379.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-E04, full insert sequence.
FL= gb:AK107979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g063501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06300Os.14283.1.A1_at11/112+3144057..3152625GTP-binding protein LepA containing protein, expressed
LOC_Os02g06310Os.45422.1.S1_x_at2/112+3154192..3157440hypothetical protein
LOC_Os02g06320OsAffx.24127.1.S1_at10/112+3158637..3160600RNA recognition motif 2 family protein
LOC_Os02g06330OsAffx.24128.1.S1_s_at11/112+3163942..3165032AP2 domain containing protein, expressed
LOC_Os02g06340Os.24778.1.S1_at11/112+3166615..3170814EH-domain containing protein 1, putative, expressed
LOC_Os02g06350OsAffx.18139.2.S1_at10/112+3171932..3174989hypothetical protein
LOC_Os02g06350Os.55379.1.S1_x_at1/112+3171932..3174989hypothetical protein
LOC_Os02g06360Os.7064.1.S1_s_at11/112+3179627..3182762KpsF/GutQ family protein, expressed
LOC_Os02g06370Os.32450.1.S1_at10/112+3182870..3187022DNA-binding protein, putative, expressed
LOC_Os02g06380OsAffx.24129.1.S1_at10/112+3188102..3190109uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os02g06390Os.5009.1.S1_at10/112+3191320..3194131expressed protein
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55379.1.S1_x_at--1047--10692Chr08:744046..744070 (25 bp)
TTGCCGGTCGCTGGATCTCCTCTAT
NONE
Os.55379.1.S1_x_at--337--9912Chr08:744075..744099 (25 bp)
TACTCCAAGCCGTTGCCGGGTGGCC
NONE
Os.55379.1.S1_x_at--187--7952Chr08:744100..744124 (25 bp)
GGATCCCCTCCGAGCCTGGTCGATG
NONE
Os.55379.1.S1_x_at--376--8092Chr08:744159..744183 (25 bp)
GGACGGCGCTCGTCACCGGCCTTTG
NONE
Os.55379.1.S1_x_at--501--8352Chr08:744228..744252 (25 bp)
GGCGTGGTCCACTCTTGCGTCGTCA
NONE
Os.55379.1.S1_x_at--55--7512Chr08:744231..744255 (25 bp)
GTGGTCCACTCTTGCGTCGTCACGG
NONE
Os.55379.1.S1_x_at--566--5932Chr08:744284..744308 (25 bp)
GAGCAGCAACAAGGGAACCGTCTTA
NONE
Os.55379.1.S1_x_at--892--7692Chr08:744333..744357 (25 bp)
GGAGGTGGGTGGTGCCGCCGGTCGC
NONE
Os.55379.1.S1_x_at--54--9633Chr08:744380..744404 (25 bp)
TCATGTCGTCGCCTCGTCGGTGAGT
NONE
Os.55379.1.S1_x_at--651--4672Chr08:744415..744439 (25 bp)
GCGGGCTGCGAGGATGCGGTGGAAC
NONE
Os.55379.1.S1_x_at--757--3315Chr08:744507..744531 (25 bp)
ATAATTTCTATGTGAAACTGACATG
NONE
Target Sequence 
TTGCCGGTCGCTGGATCTCCTCTATCCTCTACTCCAAGCCGTTGCCGGGTGGCCGGATCCCCTCCGAGCCTGGTCGATGG
GGCCTCGCCTCATGCTGTTCGCTGGGGCACCGAGGACGGCGCTCGTCACCGGCCTTTGCTCCGCTCCACAGCTGGTCGCC
ACCGTCGACCTACGCCCGGCCGGGCGTGGTCCACTCTTGCGTCGTCACGGCGGGAGCGGGAGTGGCGGAGGACGGCGGGA
GCAGCAACAAGGGAACCGTCTTACCCCGAGCGGCCACGGCGGGTTAGGGAGGTGGGTGGTGCCGCCGGTCGCCGGGCTGC
GGCAGCGGCTGGGGTCATGTCGTCGCCTCGTCGGTGAGTGCCGGCGGGCGCGGGCTGCGAGGATGCGGTGGAACAGGGCG
GTGGAGGAAAGGGGGGGGGGAGAGAATGACATGTGGGGCTCACGTGGGCCCCACCTTTTTTATAATTTCTATGTGAAACT
GACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55379.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis