Browse Element(s) Details


Os.55385.1.S1_at

Description gb:AK107988.1
DB_XREF= gi:32993197
TID=Os.55385.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-F03, full insert sequence.
FL= gb:AK107988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1597011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15910OsAffx.11069.1.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.4.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.1.S1_x_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15920NANA1+8965529..8965735hypothetical protein
LOC_Os01g15934NANA1+8970406..8974984retrotransposon, putative, centromere-specific
LOC_Os01g15950NANA1+8975807..8976082expressed protein
LOC_Os01g15960OsAffx.23265.1.S1_at11/111+8980566..8980895hypothetical protein
LOC_Os01g15970Os.4750.1.S1_x_at11/111+8983055..8984199expressed protein
LOC_Os01g15970Os.55385.1.S1_at11/111+8983055..8984199expressed protein
LOC_Os01g15979Os.94.1.S1_at11/111+8985713..8989380gb protein, putative, expressed
LOC_Os01g15990OsAffx.22206.1.S1_at11/111+8992117..8993694expressed protein
LOC_Os01g15990OsAffx.27180.1.S1_x_at1/111+8992117..8993694expressed protein
LOC_Os01g16000Os.96.1.S1_at9/111+9001392..9004857SEC14 cytosolic factor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55385.1.S1_at--792--7351Chr01:8983706..8983730 (25 bp)
GTGACATGACCTGCCAACCGGAGCT
LOC_Os01g15970
Os.55385.1.S1_at--836--4371Chr01:8983718..8983742 (25 bp)
GCCAACCGGAGCTGGATCTTAATTA
LOC_Os01g15970
Os.55385.1.S1_at--973--3131Chr01:8983756..8983780 (25 bp)
AATTATCTATGCAATGTTCTCCTCA
LOC_Os01g15970
Os.55385.1.S1_at--531--5191Chr01:8983766..8983790 (25 bp)
GCAATGTTCTCCTCATTATCTAAAA
LOC_Os01g15970
Os.55385.1.S1_at--742--2291Chr01:8983792..8983816 (25 bp)
AAATGTAATGTGTTCTCCTCAGTAT
LOC_Os01g15970
Os.55385.1.S1_at--712--10591Chr01:8983804..8983828 (25 bp)
TTCTCCTCAGTATAATACTCTCTCC
LOC_Os01g15970
Os.55385.1.S1_at--744--7011Chr01:8984061..8984085 (25 bp)
GTACTTGTTAGTGCCAAGCTCACAC
LOC_Os01g15970
Os.55385.1.S1_at--504--9131Chr01:8984097..8984121 (25 bp)
TGCTGGTCAACCTGTACTTGTAGAG
LOC_Os01g15970
Os.55385.1.S1_at--70--10051Chr01:8984117..8984141 (25 bp)
TAGAGGCATGCATGTACCTTCACCT
LOC_Os01g15970
Os.55385.1.S1_at--545--3371Chr01:8984137..8984161 (25 bp)
CACCTTTGCTTCGTTTTCGTATTAG
LOC_Os01g15970
Os.55385.1.S1_at--1158--9711Chr01:8984171..8984195 (25 bp)
TCAAGAGAAGCATCGATTTCTAGCT
LOC_Os01g15970
Target Sequence 
GTGACATGACCTGCCAACCGGAGCTGGATCTTAATTAGCTACTACTAGTTAATTATCTATGCAATGTTCTCCTCATTATC
TAAAAAAAATGTAATGTGTTCTCCTCAGTATAATACTCTCTCCGTCCTACAATATAAGAGATTTTAATTTTTTATTTGTA
ACGTTTGACCACTCGTCTTATTCAATTTTTTTTGCAAATATAAAAAACGAAAAGTTGTGCTTCAAGTACGGTAGATAATA
AAGCAAGTCACGAATAAAATAAATAATAATTTTAAAAAATTTTGAATAAAATAAGTGGTCAAACGTTACAAACAAAAATT
CAAAATCCCTTATATTATAGGACAGAGGAGAGAGAGTACTTGTTAGTGCCAAGCTCACACACCACTCTCCCTGCTGGTCA
ACCTGTACTTGTAGAGGCATGCATGTACCTTCACCTTTGCTTCGTTTTCGTATTAGAAAGAGAGATCAAGAGAAGCATCG
ATTTCTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis