Browse Element(s) Details


Os.55395.1.S1_s_at

Description gb:AK108002.1
DB_XREF= gi:32993211
TID=Os.55395.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-G07, full insert sequence.
FL= gb:AK108002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4557011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45550OsAffx.15939.1.S1_at11/116+27571576..27572064hypothetical protein
LOC_Os06g45560NANA6+27582937..27589320retrotransposon protein, putative, unclassified
LOC_Os06g45570Os.55395.1.S1_s_at11/116+27593627..27594557VQ motif family protein, expressed
LOC_Os06g45580NANA6+27597586..27598313Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g45590Os.19152.1.S1_at10/116+27600127..27604339Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os06g45600OsAffx.15940.1.S1_at11/116+27607479..27608273hypothetical protein
LOC_Os06g45610Os.28031.1.S1_at11/116+27613153..27613832expressed protein
LOC_Os06g45620OsAffx.5116.2.S1_at11/116+27617994..27620708hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55395.1.S1_s_at--78--8351Chr06:27594001..27594025 (25 bp)
GGCGGCGTTCCGGTCATCAACTTCG
LOC_Os06g45570
Os.55395.1.S1_s_at--950--7811Chr06:27594012..27594036 (25 bp)
GGTCATCAACTTCGGCTCCGACTAC
LOC_Os06g45570
Os.55395.1.S1_s_at--349--1511Chr06:27594125..27594149 (25 bp)
AGCAGCAGTACACCGGCGCACCGTT
LOC_Os06g45570
Os.55395.1.S1_s_at--658--9851Chr06:27594133..27594157 (25 bp)
TACACCGGCGCACCGTTCGGTTACG
LOC_Os06g45570
Os.55395.1.S1_s_at--845--6551Chr06:27594147..27594171 (25 bp)
GTTCGGTTACGGCAACCTGCAGCAA
LOC_Os06g45570
Os.55395.1.S1_s_at--172--6771Chr06:27594152..27594176 (25 bp)
GTTACGGCAACCTGCAGCAAGCCGG
LOC_Os06g45570
Os.55395.1.S1_s_at--926--951Chr06:27594230..27594254 (25 bp)
AGGACAGGTTGCTCCTGCAGAGCCT
LOC_Os06g45570
Os.55395.1.S1_s_at--356--9051Chr06:27594245..27594269 (25 bp)
TGCAGAGCCTCCAGTCAGCTCAGAT
LOC_Os06g45570
Os.55395.1.S1_s_at--1040--1151Chr06:27594257..27594281 (25 bp)
AGTCAGCTCAGATGCCTACTTCCGC
LOC_Os06g45570
Os.55395.1.S1_s_at--977--9771Chr06:27594317..27594341 (25 bp)
TAACCAACGGTTAATCGAAGACACA
LOC_Os06g45570
Os.55395.1.S1_s_at--735--511Chr06:27594330..27594354 (25 bp)
ATCGAAGACACATCACAAGCAAAGA
LOC_Os06g45570
Target Sequence 
GGCGGCGTTCCGGTCATCAACTTCGGCTCCGACTACGGNTTCACCGGCGCCGTCNTTCCCTTCTCCGACCANCTCCAACC
GCGCCGGNCGACGTTCCAGGACCACCAACAGCTCCTCCGACCGCAGCAGCAGTACACCGGCGCACCGTTCGGTTACGGCA
ACCTGCAGCAAGCCGGCGGCGCCGGCACCGGCGCCGGNGACATGTTCAGCCACGCNCTGANCTCGNNCGAGGACAGGTTG
CTCCTGCAGAGCCTCCAGTCAGCTCAGATGCCTACTTCCGCCGCTAACCACAGCGCTAATGGTTACTTCGCCTAATTAAC
CAACGGTTAATCGAAGACACATCACAAGCAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55395.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis