Browse Element(s) Details


Os.55415.1.S1_at

Description gb:AK108043.1
DB_XREF= gi:32993252
TID=Os.55415.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-D11, full insert sequence.
FL= gb:AK108043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1817011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18150OsAffx.12910.1.S1_at11/113+10142507..10144524Serine/threonine phosphatase type 2c, putative, expressed
LOC_Os03g18160Os.6159.1.S1_at11/113+10150832..10153545Mitochondrial carrier protein, expressed
LOC_Os03g18170Os.55415.1.S1_at11/113+10163613..10166505Protein kinase domain containing protein, expressed
LOC_Os03g18180Os.13953.1.S1_at11/113+10166460..10169274Ran-binding protein 1 homolog c, putative, expressed
LOC_Os03g18190Os.7252.1.S1_at4/113+10171147..10181172Importin-beta N-terminal domain containing protein
LOC_Os03g18200Os.11927.1.S1_x_at11/113+10183850..10189337DnaJ domain containing protein, expressed
LOC_Os03g18200Os.16245.1.S1_at11/113+10183850..10189337DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55415.1.S1_at--689--1631Chr03:10164364..10164388 (25 bp)
AGCGGTGGACCTGCGATCAGCTGCT
LOC_Os03g18170
Os.55415.1.S1_at--107--4691Chr03:10164477..10164501 (25 bp)
GCGGCGTCCATGTCCGATTCGGACT
LOC_Os03g18170
Os.55415.1.S1_at--950--2931Chr03:10164563..10164587 (25 bp)
AAGGCTCGTCGAGTTGGCGTCAAAC
LOC_Os03g18170
Os.55415.1.S1_at--679--2151Chr03:10164664..10164688 (25 bp)
ACACGACAGCGACGAATGCACCCGT
LOC_Os03g18170
Os.55415.1.S1_at--378--4171Chr03:10164782..10164806 (25 bp)
CGCCGGCCGTGATCGCTGTGACAGC
LOC_Os03g18170
Os.55415.1.S1_at--459--3891Chr03:10164797..10164821 (25 bp)
CTGTGACAGCCAGCATGGGCACTAT
LOC_Os03g18170
Os.55415.1.S1_at--1086--8631Chr03:10164812..10164836 (25 bp)
TGGGCACTATAAATGCGAGCTAGCT
LOC_Os03g18170
Os.55415.1.S1_at--401--611Chr03:10164824..10164848 (25 bp)
ATGCGAGCTAGCTCGCACTAGGCGA
LOC_Os03g18170
Os.55415.1.S1_at--75--3331Chr03:10164839..10164863 (25 bp)
CACTAGGCGAGCTCGGTTGGCTGTT
LOC_Os03g18170
Os.55415.1.S1_at--1110--3871Chr03:10164877..10164901 (25 bp)
CTGTCATGTACAGTTATCTCATTGA
LOC_Os03g18170
Os.55415.1.S1_at--351--10251Chr03:10164913..10164937 (25 bp)
TTTGGGTTCAATTCAAGCCGCCGTT
LOC_Os03g18170
Target Sequence 
AGCGGTGGACCTGCGATCAGCTGCTGCGCCACCCGTTCCTCTCCGCCGCGGACGTCCACGACGGCGGCGAGCCGTCGCCG
TTCCCGTCGCCCCGAGCCGTTCTCGACTGGGCGGCGGCGTCCATGTCCGATTCGGACTCCGACGACTCGGGCGGCGCGGA
GGCGCGCAGCGAGCACGAGATGATGGCGCGCGCCAAGGGAAGGCTCGTCGAGTTGGCGTCAAACGCAAGCTGGGGGCGCG
AGTGGGGCGCGGGGCCCACCTGGGAGGCGGCCGACACCTGGGCCCCACCGTCCAGTCCGGACACGACAGCGACGAATGCA
CCCGTCCCGTCCAACCCCGCCGCGGTCGCCGACGCCGGTGGGCCACCCGCCGTGATCGCTGGCGGCCGTGACAGCGTCCT
CGCCGTCGCCACCGCCGGCGCCGGCCGTGATCGCTGTGACAGCCAGCATGGGCACTATAAATGCGAGCTAGCTCGCACTA
GGCGAGCTCGGTTGGCTGTTGCGTCCGTGGCTGCTGTCATGTACAGTTATCTCATTGATTCAATCATATTTTGGGTTCAA
TTCAAGCCGCCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis