Browse Element(s) Details


Os.55469.1.S1_s_at

Description gb:AK108144.1
DB_XREF= gi:32993353
TID=Os.55469.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-E12, full insert sequence.
FL= gb:AK108144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0609011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06050Os.18022.2.S1_x_at11/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.1.S1_at10/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.2.S1_at8/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06060OsAffx.29059.1.S1_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06060OsAffx.29059.1.S1_s_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06070Os.48069.1.S1_at10/118+3306618..3311692hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os08g06090Os.55469.1.S1_s_at11/118+3320015..3321237Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06100Os.11202.1.S1_at11/118+3331409..3334574Caffeic acid 3-O-methyltransferase, putative, expressed
LOC_Os08g06100Os.22368.1.S1_at1/118+3331409..3334574Caffeic acid 3-O-methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0010200biological_processresponse to chitin
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55469.1.S1_s_at--282--2751Chr08:3320585..3320609 (25 bp)
AAGAACCCATCTTGCTTAGCACCCA
LOC_Os08g06090
Os.55469.1.S1_s_at--970--2911Chr08:3320353..3320377 (25 bp)
AAGGATGGCTACCTGCACTGCATTG
LOC_Os08g06090
Os.55469.1.S1_s_at--585--1971Chr08:3320337..3320361 (25 bp)
ACTGCATTGGATCTGGTGAATTTCA
LOC_Os08g06090
Os.55469.1.S1_s_at--1017--5211Chr08:3320320..3320344 (25 bp)
GAATTTCAGCCCTAGCTAGCTATAG
LOC_Os08g06090
Os.55469.1.S1_s_at--724--3711Chr08:3320305..3320329 (25 bp)
CTAGCTATAGATCCAACATCTCCTC
LOC_Os08g06090
Os.55469.1.S1_s_at--884--2031Chr08:3320255..3320279 (25 bp)
ACTTCACTTCACATCAACTTTTTCT
LOC_Os08g06090
Os.55469.1.S1_s_at--863--9531Chr08:3320216..3320240 (25 bp)
TCTACTTTACTTTCTTCTTTTGTTG
LOC_Os08g06090
Os.55469.1.S1_s_at--210--9191Chr08:3320193..3320217 (25 bp)
TGCCTTCACCTCCTTTTTGAAATTT
LOC_Os08g06090
Os.55469.1.S1_s_at--79--3751Chr08:3320111..3320135 (25 bp)
CTCTCCCCTTGTCATTAACTTAATT
LOC_Os08g06090
Os.55469.1.S1_s_at--678--1351Chr08:3320065..3320089 (25 bp)
AGAGATGTGTACATACCTGCCTCCA
LOC_Os08g06090
Os.55469.1.S1_s_at--237--9971Chr08:3320052..3320076 (25 bp)
TACCTGCCTCCACTTTGACAAATAT
LOC_Os08g06090
Target Sequence 
AAGAACCCATCTTGCTTAGCACCCAACACCCCCTTCCACCCCAAGAGCAACAAGGGTTCCCTCCTCCTTTCTCCACCAAT
GGATCAAATCCAATCAAAATGGAAGAACACACAACACAAGAGAAGAGAGATAGAGAGAGAAATCAATGGAGGAAGAAGAT
GAGAGGAGAGAGAGGGGGTGTGTGTGGTGGAGGAGTATTATTGGTAGGTGAGGCACTAATTATGAGGAGGACAAGGATGG
CTACCTGCACTGCATTGGATCTGGTGAATTTCAGCCCTAGCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTC
TCTTCTCTTCACTTCACTTCACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTCA
CCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTTTTTTTTGAGGGTTTCCTCTCC
CCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGAGAGAGATGTGTACATACCTGCCTCCACTTTGACAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55469.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis