Browse Element(s) Details


Os.55476.1.S1_at

Description gb:AK108155.1
DB_XREF= gi:32993364
TID=Os.55476.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G06, full insert sequence.
FL= gb:AK108155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2687011/11expressed protein
LOC_Os08g193801/11hypothetical protein
LOC_Os03g415401/11hypothetical protein
LOC_Os02g421001/11hypothetical protein
LOC_Os09g342601/11hypothetical protein
LOC_Os06g202191/11
LOC_Os07g050201/11expressed protein
LOC_Os01g598191/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26840Os.17793.1.S1_at11/115+15496167..15498004xanthine/uracil permease family protein, expressed
LOC_Os05g26850OsAffx.4438.1.S1_at10/115+15507523..15509095hypothetical protein
LOC_Os05g26860OsAffx.27030.1.S1_at11/115+15509826..15512408hypothetical protein
LOC_Os05g26870Os.55476.1.S1_at11/115+15512863..15513786expressed protein
LOC_Os05g26880OsAffx.4439.1.S1_at11/115+15523704..15525324hypothetical protein
LOC_Os05g26890Os.5302.1.S1_a_at11/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
LOC_Os05g26890Os.14876.1.S1_at6/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55476.1.S1_at--294--7751Chr05:15513323..15513347 (25 bp)
GGTGATGACGGCTTCAGATCGACAC
LOC_Os05g26870
Os.55476.1.S1_at--752--591Chr05:15513275..15513299 (25 bp)
ATGCCTCTTGCGTCTCCGGTTGGGA
LOC_Os05g26870
Os.55476.1.S1_at--837--3971Chr05:15513205..15513229 (25 bp)
CGGTGGCTCGTCCTAATTTGGTCCA
LOC_Os05g26870
Os.55476.1.S1_at--438--9751Chr05:15513192..15513216 (25 bp)
TAATTTGGTCCACGGCGGCTAGAAC
LOC_Os05g26870
Os.55476.1.S1_at--387--8351Chr05:15513179..15513203 (25 bp)
GGCGGCTAGAACACCGAGGTCGACA
LOC_Os05g26870
Os.55476.1.S1_at--600--7591Chr05:15513127..15513151 (25 bp)
GGGCATCCATGTGCACAGAGGCGTT
LOC_Os05g26870
Os.55476.1.S1_at--35--6711Chr05:15513105..15513129 (25 bp)
GTTCCTGTCGACTCACTGCATGGAA
LOC_Os05g26870
Os.55476.1.S1_at--372--4631Chr05:15512997..15513021 (25 bp)
GCGATTGGCGCCATCCTTCTTGGTA
LOC_Os05g26870
Os.55476.1.S1_at--147--7851Chr05:15512976..15513000 (25 bp)
GGTAGCCCGCGATGAGATGAACAGA
LOC_Os05g26870
Os.55476.1.S1_at--270--84131Chr10:11555351..11555375 (25 bp)
GGCCCATGGGCAAACTTGTCTTTAA
NONE
Os.55476.1.S1_at--408--3271Chr05:15512883..15512907 (25 bp)
CAAAATTTCTCTCTGTTTCGATCGA
LOC_Os05g26870
Target Sequence 
GGTGATGACGGCTTCAGATCGACACCGGGGAAGAGGAAGCCGATCTCCATGCCTCTTGCGTCTCCGGTTGGGATTCTTGG
GGGGTCTTGGAGGGGAGATCAAGGCGGTGCTGATGGCGCGGTGGCTCGTCCTAATTTGGTCCACGGCGGCTAGAACACCG
AGGTCGACATGGCGGTGACCCTGGGAGCACGCTCCTGGGCATCCATGTGCACAGAGGCGTTCCTGTCGACTCACTGCATG
GAAAGGGATGAGATTAGAGGGAATGAAACCAGTGTCTTGAGGAGGTAATGAAACGTGGATGAGATTGGGACGACGACGGC
TCGGCGGCGATTGGCGCCATCCTTCTTGGTAGCCCGCGATGAGATGAACAGAGAAAGAGACGAAGAAGAACAGAGAAAGA
GAGATTGACAACTGGGCCCATGGGCAAACTTGTCTTTAACCAAAATTTCTCTCTGTTTCGATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis