Browse Element(s) Details


Os.55491.1.S1_at

Description gb:AK108190.1
DB_XREF= gi:32993399
TID=Os.55491.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C01, full insert sequence.
FL= gb:AK108190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0555011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05500OsAffx.30828.1.S1_at11/1111+2479882..2480121hypothetical protein
LOC_Os11g05510NANA11+2484109..2484526tuber storage protein, putative
LOC_Os11g05520Os.54903.1.S1_at2/1111+2485289..2485837Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os11g05530Os.51005.1.S1_at11/1111+2486586..2487649expressed protein
LOC_Os11g05540Os.21289.1.S1_at11/1111+2496341..2501137rac GTPase activating protein 1, putative, expressed
LOC_Os11g05550Os.55491.1.S1_at11/1111+2502845..2504306expressed protein
LOC_Os11g05550Os.51098.1.S1_x_at1/1111+2502845..2504306expressed protein
LOC_Os11g05556Os.49423.1.S1_at11/1111+2513385..2517848Signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed
LOC_Os11g05562Os.9376.1.S1_at10/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05562OsAffx.29659.1.S1_at9/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05570Os.54312.1.S1_at11/1111+2525648..2528553ribonuclease HI large subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55491.1.S1_at--1015--9611Chr11:2503935..2503959 (25 bp)
TCATCCCCGGGAAGGATCTCCTGCG
LOC_Os11g05550
Os.55491.1.S1_at--557--5311Chr11:2503945..2503969 (25 bp)
GAAGGATCTCCTGCGGGCGACTCGC
LOC_Os11g05550
Os.55491.1.S1_at--442--3411Chr11:2504067..2504091 (25 bp)
CAGCAGCATGCGTAGGCGGCGACAC
LOC_Os11g05550
Os.55491.1.S1_at--482--8351Chr11:2504081..2504105 (25 bp)
GGCGGCGACACGTTCGCTTAATTAA
LOC_Os11g05550
Os.55491.1.S1_at--106--371Chr11:2504114..2504138 (25 bp)
ATAATCTATTATTCTTGTGCTAACT
LOC_Os11g05550
Os.55491.1.S1_at--233--8691Chr11:2504129..2504153 (25 bp)
TGTGCTAACTAATTTGGTCAAGAAG
LOC_Os11g05550
Os.55491.1.S1_at--1006--2231Chr11:2504201..2504225 (25 bp)
ACAATACTTTGTCAGGTCATAGGAA
LOC_Os11g05550
Os.55491.1.S1_at--1077--7811Chr11:2504215..2504239 (25 bp)
GGTCATAGGAACATGTCGCTCTGTA
LOC_Os11g05550
Os.55491.1.S1_at--617--5491Chr11:2504223..2504247 (25 bp)
GAACATGTCGCTCTGTACAATAAGA
LOC_Os11g05550
Os.55491.1.S1_at--261--9791Chr11:2504243..2504267 (25 bp)
TAAGAATGTACGATCTGACCTGAAT
LOC_Os11g05550
Os.55491.1.S1_at--530--6991Chr11:2504250..2504274 (25 bp)
GTACGATCTGACCTGAATATCAAAG
LOC_Os11g05550
Target Sequence 
TCATCCCCGGGAAGGATCTCCTGCGGGCGACTCGCGAGGGCGGCCGCCTCAGGCTGCAGTTCTCCAACGCCGCCGCCGCC
GCCGCCGCCGCCGTCGGCGTCATCGACGACGAGGAGATGCATGGACAAGAAGCAGCAGCATGCGTAGGCGGCGACACGTT
CGCTTAATTAACTCCTATTATAATCTATTATTCTTGTGCTAACTAATTTGGTCAAGAAGCACTAATTAAACATACTTGTG
ATGCATATATATGATTTCATATACATACAATACTTTGTCAGGTCATAGGAACATGTCGCTCTGTACAATAAGAATGTACG
ATCTGACCTGAATATCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis