Browse Element(s) Details


Os.55495.1.S1_at

Description gb:AK108199.1
DB_XREF= gi:32993408
TID=Os.55495.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C10, full insert sequence.
FL= gb:AK108199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2044011/11succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20410OsAffx.29938.1.S1_at11/119+12278794..12279745hypothetical protein
LOC_Os09g20420OsAffx.7080.2.A1_at11/119+12283152..12284276hypothetical protein
LOC_Os09g20430Os.18154.1.S1_at10/119+12288982..12293954SCO1/SenC family protein, expressed
LOC_Os09g20440Os.55495.1.S1_at11/119+12294673..12297188succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed
LOC_Os09g20450NANA9+12304525..12309172transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g20460NANA9+12318666..12319982VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006121biological_processmitochondrial electron transport, succinate to ubiquinone
GO:0005739cellular_componentmitochondrion
GO:0045281cellular_componentsuccinate dehydrogenase complex
GO:0000104molecular_functionsuccinate dehydrogenase activity
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55495.1.S1_at--433--9171Chr09:12295188..12295212 (25 bp)
TGCCCCACATGTACGTCGTGAGGGA
LOC_Os09g20440
Os.55495.1.S1_at--1112--9931Chr09:12295177..12295201 (25 bp)
TACGTCGTGAGGGACCTCGTCGTCG
LOC_Os09g20440
Os.55495.1.S1_at--115--9991Chr09:12295138..12295162 (25 bp)
TACCAGCAGTACAAGTCGGTGGAGC
LOC_Os09g20440
Os.55495.1.S1_at--573--8531Chr09:12295038..12295062 (25 bp)
TGGACGGGCTGTACGAGTGCATTCT
LOC_Os09g20440
Os.55495.1.S1_at--284--1131Chr09:12295023..12295047 (25 bp)
AGTGCATTCTGTGCGCGTGCTGCAG
LOC_Os09g20440
Os.55495.1.S1_at--1162--8631Chr09:12294865..12294889 (25 bp)
TGGGACAAGCTCTACCGCTGCCGGA
LOC_Os09g20440
Os.55495.1.S1_at--777--9171Chr09:12294847..12294871 (25 bp)
TGCCGGATGATCAAGAGCTGCACGG
LOC_Os09g20440
Os.55495.1.S1_at--784--8991Chr09:12294777..12294801 (25 bp)
TGAAGACCCTGCACCAGCTCGGCAA
LOC_Os09g20440
Os.55495.1.S1_at--442--9451Chr09:12294759..12294783 (25 bp)
TCGGCAAGCCATGACAGAGACACAC
LOC_Os09g20440
Os.55495.1.S1_at--1010--8791Chr09:12294721..12294745 (25 bp)
TGTTCTAGTGTTTAGCGTGCGTTCC
LOC_Os09g20440
Os.55495.1.S1_at--954--4651Chr09:12294707..12294731 (25 bp)
GCGTGCGTTCCAGTTAATTAATCTA
LOC_Os09g20440
Target Sequence 
TGCCCCACATGTACGTCGTGAGGGACCTCGTCGTCGACCTGACCAGCTTCTACCAGCAGTACAAGTCGGTGGAGCCGTGG
CTGAAGAGGAAGACGAAGACGAAGACGGAGACGACGGAGCACGCGCAGTCGCCGGAGGAGAGGAAGAGGCTGGACGGGCT
GTACGAGTGCATTCTGTGCGCGTGCTGCAGCGCGGCGTGCCCGTCCTACTGGTGGAACGCGGAGGCGTTCCTGGGGCCGG
CGGCGCTGCTGCACGCGTACCGGTGGGTGTCGGACAGCCGCGACGAGTACGCGGCGGAGCGGGTGCAGGCGCTGGCGGAG
GGGTGGGACAAGCTCTACCGCTGCCGGATGATCAAGAGCTGCACGGCCACCTGCCCCAAGAGCCTCGACCCCGCCGCCGC
CATCTCCGCCATGAAGACCCTGCACCAGCTCGGCAAGCCATGACAGAGACACACAGAGAGAGAATGTTGTTCTAGTGTTT
AGCGTGCGTTCCAGTTAATTAATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis