Browse Element(s) Details


Os.55596.1.S1_at

Description gb:AK108387.1
DB_XREF= gi:32993596
TID=Os.55596.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F01, full insert sequence.
FL= gb:AK108387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4952010/11PPR868-14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49480OsAffx.14344.1.S1_at11/114+29294790..29295632Legume lectins beta domain containing protein
LOC_Os04g49490OsAffx.14345.1.S1_at11/114+29296169..29298855protein phosphatase 2C family protein, putative, expressed
LOC_Os04g49500Os.53780.1.S1_at11/114+29303288..29308363U-box domain containing protein, expressed
LOC_Os04g49510Os.282.2.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49510Os.282.1.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49520Os.55596.1.S1_at10/114+29316733..29319450PPR868-14, putative, expressed
LOC_Os04g49530Os.47740.1.S1_at11/114+29319648..29323458expressed protein
LOC_Os04g49540Os.11660.1.S1_at11/114+29322890..29325612expressed protein
LOC_Os04g49550OsAffx.26540.1.S1_s_at11/114+29333054..29334019expressed protein
LOC_Os04g49550Os.54859.1.S1_at10/114+29333054..29334019expressed protein
LOC_Os04g49560Os.54479.1.S1_at11/114+29337808..29344158DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55596.1.S1_at--290--2371Chr04:29317207..29317231 (25 bp)
AAACCCGGGCTATAGCTGGATGGAA
LOC_Os04g49520
Os.55596.1.S1_at--600--2211Chr04:29317175..29317199 (25 bp)
ACAAGGTTCACGTCTTCAAAGCAGA
LOC_Os04g49520
Os.55596.1.S1_at--91--7391Chr04:29317146..29317170 (25 bp)
GTGAGCCACCCACAAGTGATTGCAA
LOC_Os04g49520
Os.55596.1.S1_at--789--7871Chr04:29317077..29317101 (25 bp)
GGTTATGTGAGGACCGAGTCGCCAC
LOC_Os04g49520
Os.55596.1.S1_at--65--1151Chr04:29317061..29317085 (25 bp)
AGTCGCCACGGTCTGAGATTCATCA
LOC_Os04g49520
Os.55596.1.S1_at--131--4031Chr04:29317016..29317040 (25 bp)
CGTTTGGGATCATGAGCTTGCCTGC
LOC_Os04g49520
Os.55596.1.S1_at--767--4931Chr04:29316993..29317017 (25 bp)
GCTTGGATGCCTATTCACATCATGA
LOC_Os04g49520
Os.55596.1.S1_at--10--5731Chr04:29316948..29316972 (25 bp)
GACTGCCACACGGTGATCAAGCTGA
LOC_Os04g49520
Os.55596.1.S1_at--506--251Chr04:29316924..29316948 (25 bp)
ATATCTTCTGTGACTGATCGGGAGT
LOC_Os04g49520
Os.55596.1.S1_at--413--8591NONE
TGGTCACGGAACTTTTCTCCGGAAT
NONE
Os.55596.1.S1_at--34--3791Chr04:29316739..29316763 (25 bp)
CTCGTGTTATTTATCTCTACCTTTG
LOC_Os04g49520
Target Sequence 
AAACCCGGGCTATAGCTGGATGGAAGTCGAAAACAAGGTTCACGTCTTCAAAGCAGATGATGTGAGCCACCCACAAGTGA
TTGCAATTCGTAACAAGATGGATGAACTCATGGAAAAGATTGCACATTTCGGTTATGTGAGGACCGAGTCGCCACGGTCT
GAGATTCATCACAGCGAGAAGCTGGCTGTGGCGTTTGGGATCATGAGCTTGCCTGCTTGGATGCCTATTCACATCATGAA
GAACCTGCGCATTTGCGGGGACTGCCACACGGTGATCAAGCTGATATCTTCTGTGACTGATCGGGAGTTTGTGATCCGAG
ATGGTGTTCGGTTTCACCACTTCAAAAGTGGTTCTTGTTCTTGCGGGGACTATTGGTGGTCACGGAACTTTTCTCCGGAA
TACATTTTTGTAGCCCAGAAATTGATTGAGAGAAGTAACATAATCTGCAACTCTGGAAATTTCATTTTCTCGTGTTATTT
ATCTCTACCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis