Browse Element(s) Details


Os.55600.1.S1_at

Description gb:AK108398.1
DB_XREF= gi:32993607
TID=Os.55600.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F12, full insert sequence.
FL= gb:AK108398.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0855011/11oxidoreductase, aldo/keto reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08530Os.40360.1.S1_x_at1/114+4606313..4608313Insect antifreeze protein
LOC_Os04g08540Os.45173.5.S1_x_at4/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540OsAffx.8939.1.S1_x_at3/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540OsAffx.8939.1.S1_at3/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540Os.45173.1.S1_x_at3/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540Os.47999.2.A1_x_at2/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540Os.47999.3.A1_x_at1/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08550Os.55600.1.S1_at11/114+4625380..4628072oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os04g08560OsAffx.25929.1.S1_at11/114+4631708..4637648Protein phosphatase 2C containing protein, expressed
LOC_Os04g08570OsAffx.3749.1.S1_s_at11/114+4638807..4639709hypothetical protein
LOC_Os04g08580NANA4+4651776..4655328retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55600.1.S1_at--1104--4231Chr04:4627277..4627301 (25 bp)
CCGTCATGAACAGCGGCGTGCTGCA
LOC_Os04g08550
Os.55600.1.S1_at--204--6331Chr04:4627238..4627259 (22 bp)
GATGCAAGACGATCGCTCAGGTGGC
LOC_Os04g08550
Os.55600.1.S1_at--392--1871Chr04:4625648..4625672 (25 bp)
ACGAGGGCCGGATGAAGCAGAACAT
LOC_Os04g08550
Os.55600.1.S1_at--362--9371Chr04:4625615..4625639 (25 bp)
TCGACTGGGAGCTCAGCGACCAAGA
LOC_Os04g08550
Os.55600.1.S1_at--536--5871Chr04:4625558..4625582 (25 bp)
GAGCCTGCCATGGAAACTACTTCGT
LOC_Os04g08550
Os.55600.1.S1_at--551--831Chr04:4625549..4625573 (25 bp)
ATGGAAACTACTTCGTCTCGCCGGA
LOC_Os04g08550
Os.55600.1.S1_at--19--8231Chr04:4625474..4625498 (25 bp)
GGCAACGACTAGATCTCTATTCGCA
LOC_Os04g08550
Os.55600.1.S1_at--584--91Chr04:4625456..4625480 (25 bp)
ATTCGCATCATTGTGCTGGTCAAAA
LOC_Os04g08550
Os.55600.1.S1_at--1157--9911Chr04:4625431..4625455 (25 bp)
TACTGTCTTGTGTTTATATGGATCA
LOC_Os04g08550
Os.55600.1.S1_at--812--6431Chr04:4625411..4625435 (25 bp)
GATCATCGATGCTAGGTCATTCCCA
LOC_Os04g08550
Os.55600.1.S1_at--831--7813Chr05:22592910..22593408 (25 bp)
GGTCATTCCCAACTCAATAATTATG
NONE
Target Sequence 
CCGTCATGAACAGCGGCGTGCTGCACGGCGTCGCCGCCGCGAGATGCAAGACGATCGCTCAGGTGGCGTTAAGGTGGCTG
TACGAGCAAGGCGTGTGCATGGTGGCGAGGAGCTTCAACGAGGGCCGGATGAAGCAGAACATGGACATCTTCGACTGGGA
GCTCAGCGACCAAGACAAGGCGATGATCGCCGGCGTGCCGCAGCGGCGAGCCTGCCATGGAAACTACTTCGTCTCGCCGG
ACGGCCCGTACAAGTCCCTCCACGACCTCTGGGACGGCGAGATCTGACGACGGCAACGACTAGATCTCTATTCGCATCAT
TGTGCTGGTCAAAATACTGTCTTGTGTTTATATGGATCATCGATGCTAGGTCATTCCCAACTCAATAATTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis