Browse Element(s) Details


Os.55604.1.S1_at

Description gb:AK108402.1
DB_XREF= gi:32993611
TID=Os.55604.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-G05, full insert sequence.
FL= gb:AK108402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g240709/11hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24050Os.54844.1.S1_at1/113+13628883..13634122hypothetical protein
LOC_Os03g24060Os.47911.1.S1_at1/113+13638491..13641604Tetratricopeptide repeat protein 11, putative, expressed
LOC_Os03g24070Os.55604.1.S1_at9/113+13645737..13648962hydrolase, putative, expressed
LOC_Os03g24080NANA3+13653613..13654080hypothetical protein
LOC_Os03g24090OsAffx.31294.1.S1_x_at9/113+13654817..13655898hypothetical protein
LOC_Os03g24090OsAffx.31294.1.S1_at7/113+13654817..13655898hypothetical protein
LOC_Os03g24090OsAffx.25093.1.S1_at2/113+13654817..13655898hypothetical protein
LOC_Os03g24100NANA3+13657533..13658626expressed protein
LOC_Os03g24110NANA3+13663611..13670561retrotransposon protein, putative, unclassified
LOC_Os03g24120NANA3+13671182..13674322retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55604.1.S1_at--134--8911Chr03:13646409..13646433 (25 bp)
TGAGATCCTTGCGAGATACCGGCGT
LOC_Os03g24070
Os.55604.1.S1_at--255--311Chr03:13646424..13646448 (25 bp)
ATACCGGCGTGCGTATGAGCAACCG
LOC_Os03g24070
Os.55604.1.S1_at--1002--4671NONE
GCGGATCACGGCTCAGTACTATATG
NONE
Os.55604.1.S1_at--633--8291Chr03:13647715..13647739 (25 bp)
GGCTTGGAAGCTTTGTGATCCTGAT
LOC_Os03g24070
Os.55604.1.S1_at--377--1051Chr03:13647772..13647796 (25 bp)
AGGTGTCAAAACTGCTGTTGTCTCC
LOC_Os03g24070
Os.55604.1.S1_at--909--6631Chr03:13647788..13647812 (25 bp)
GTTGTCTCCAATTTTGATACCCGTC
LOC_Os03g24070
Os.55604.1.S1_at--464--9931Chr03:13647813..13647837 (25 bp)
TACGGCCTCTGTTACATGTTCTGAA
LOC_Os03g24070
Os.55604.1.S1_at--279--791Chr03:13648839..13648863 (25 bp)
ATGGGCAGTGGTTCTCAGGAGCATT
LOC_Os03g24070
Os.55604.1.S1_at--616--6271Chr03:13648896..13648920 (25 bp)
GATGTACATAGCAGAGACCCGTCCT
LOC_Os03g24070
Os.55604.1.S1_at--1057--1111Chr03:13648930..13648954 (25 bp)
AGTGACGTTGTCTGCTGTTCAGTGA
LOC_Os03g24070
Os.55604.1.S1_at--903--1111Chr03:13648950..13648974 (25 bp)
AGTGAGTGCTCGAGACATTTCCCTT
NONE
Target Sequence 
TGAGATCCTTGCGAGATACCGGCGTGCGTATGAGCAACCGTGGGGCGGATCACGGCTCAGTACTATATGACAGAGAAGGC
TTGGAAGCTTTGTGATCCTGATGCTGAAAACGTATTTAAAGCTTTAAGAAAGGCAGGTGTCAAAACTGCTGTTGTCTCCA
ATTTTGATACCCGTCTACGGCCTCTGTTACATGTTCTGAAGTGTGATCACTGGTTTGATGCGGTTGCGGTCTCTGCTGAG
GTTGCTGCAGAAAAGCCAAACCCAACAATATTTCTGAAGGCATGTGAGTCTTTAGGTGTCAAACCTGAAGAGGCCGTGCA
TGTCGGCGATGATCGTAGAATGATATATGGGGAGCTAGAGATGCAGGCTGCGATGCCTGGCTATGGGGAAGTGATGTTCA
CTCTTTCAAGGAGGTTGCAGAGAGGATCGGGGTTGAGGTGGCCAAGTGATGGGCAGTGGTTCTCAGGAGCATTAATCGAT
ATATATGGTTTAGGAGTGCGGTCGTGATGTACATAGCAGAGACCCGTCCTTGTTGCTCGAGTGACGTTGTCTGCTGTTCA
GTGAGTGCTCGAGACATTTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis