Browse Element(s) Details


OsAffx.25093.1.S1_at

Description tigr:9631.m01458
TID=OsAffx.25093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1513011/11hypothetical protein
LOC_Os03g240902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15070OsAffx.3247.1.S1_at10/113+8216807..8219738hypothetical protein
LOC_Os03g15080Os.49583.1.S1_at11/113+8220585..8221555expressed protein
LOC_Os03g15090OsAffx.25091.1.S1_at11/113+8226667..8227302hypothetical protein
LOC_Os03g15100NANA3+8227607..8228455hypothetical protein
LOC_Os03g15110Os.27141.1.S1_at11/113+8230197..8232456expressed protein
LOC_Os03g15110Os.57365.1.S1_at10/113+8230197..8232456expressed protein
LOC_Os03g15110OsAffx.28452.1.S1_x_at7/113+8230197..8232456expressed protein
LOC_Os03g15120Os.33841.1.A1_at10/113+8234542..8239849Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
LOC_Os03g15120OsAffx.13488.1.S1_at2/113+8234542..8239849Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
LOC_Os03g15130OsAffx.25093.1.S1_at11/113+8244399..8244707hypothetical protein
LOC_Os03g15140OsAffx.13716.1.S1_at1/113+8247884..8252934retrotransposon protein, putative, unclassified
LOC_Os03g15150NANA3+8254226..8254819hypothetical protein
LOC_Os03g15160NANA3+8260070..8266794retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25093.1.S1_at--424--10711Chr03:8244604..8244628 (25 bp)
TTGCGCCATGGCAATGCTTGTCGCT
LOC_Os03g15130
OsAffx.25093.1.S1_at--116--4431Chr03:8244600..8244624 (25 bp)
GCCATGGCAATGCTTGTCGCTGCCT
LOC_Os03g15130
OsAffx.25093.1.S1_at--596--3791Chr03:8244558..8244582 (25 bp)
CTCCGATATCGGTCACACGTCGTCT
LOC_Os03g15130
OsAffx.25093.1.S1_at--369--6511Chr03:8244554..8244578 (25 bp)
GATATCGGTCACACGTCGTCTCTGC
LOC_Os03g15130
OsAffx.25093.1.S1_at--735--8891Chr03:8244532..8244556 (25 bp)
TGCCGCCGACGGAGTCAAACCACTT
LOC_Os03g15130
OsAffx.25093.1.S1_at--695--4512Chr11:19625264..19625305 (25 bp)
GCCGACGGAGTCAAACCACTTGCGC
NONE
OsAffx.25093.1.S1_at--325--1933Chr03:13655012..13655033 (22 bp)
ACGGAGTCAAACCACTTGCGCACGG
LOC_Os03g24090
OsAffx.25093.1.S1_at--678--1931Chr03:8244503..8244527 (25 bp)
ACGGCGAAGTCGTCCCGCGATGGCT
LOC_Os03g15130
OsAffx.25093.1.S1_at--1088--2831Chr03:8244497..8244521 (25 bp)
AAGTCGTCCCGCGATGGCTTGAGGA
LOC_Os03g15130
OsAffx.25093.1.S1_at--853--9411Chr03:8244494..8244518 (25 bp)
TCGTCCCGCGATGGCTTGAGGACGA
LOC_Os03g15130
OsAffx.25093.1.S1_at--27--1872Chr03:13655075..13655099 (25 bp)
ACGACGCCGGCTGTGTTGGCCTTGA
LOC_Os03g24090
Target Sequence 
TTGCGCCATGGCAATGCTTGTCGCTGCCTCCAGTGTCGGGATGGCGCTCCGATATCGGTCACACGTCGTCTCTGCCGCCG
ACGGAGTCAAACCACTTGCGCACGGCGAAGTCGTCCCGCGATGGCTTGAGGACGAGCGAGAAAGAGACGACGCCGGCTGT
GTTGGCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis