Browse Element(s) Details


Os.33841.1.A1_at

Description gb:AK073854.1
DB_XREF= gi:32983877
TID=Os.33841.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072A12, full insert sequence.
FL= gb:AK073854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1512010/11Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15070OsAffx.3247.1.S1_at10/113+8216807..8219738hypothetical protein
LOC_Os03g15080Os.49583.1.S1_at11/113+8220585..8221555expressed protein
LOC_Os03g15090OsAffx.25091.1.S1_at11/113+8226667..8227302hypothetical protein
LOC_Os03g15100NANA3+8227607..8228455hypothetical protein
LOC_Os03g15110Os.27141.1.S1_at11/113+8230197..8232456expressed protein
LOC_Os03g15110Os.57365.1.S1_at10/113+8230197..8232456expressed protein
LOC_Os03g15110OsAffx.28452.1.S1_x_at7/113+8230197..8232456expressed protein
LOC_Os03g15120Os.33841.1.A1_at10/113+8234542..8239849Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
LOC_Os03g15120OsAffx.13488.1.S1_at2/113+8234542..8239849Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
LOC_Os03g15130OsAffx.25093.1.S1_at11/113+8244399..8244707hypothetical protein
LOC_Os03g15140OsAffx.13716.1.S1_at1/113+8247884..8252934retrotransposon protein, putative, unclassified
LOC_Os03g15150NANA3+8254226..8254819hypothetical protein
LOC_Os03g15160NANA3+8260070..8266794retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000105biological_processhistidine biosynthesis
GO:0009507cellular_componentchloroplast
GO:0000107molecular_functionimidazoleglycerol-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33841.1.A1_at--895--4991Chr03:8236346..8236368 (23 bp)
GCATGGTACCAGTGCACAGTAAGTG
LOC_Os03g15120
Os.33841.1.A1_at--629--7451Chr03:8235225..8235249 (25 bp)
GTGTCAGATGCTGTGACTATCCCTG
LOC_Os03g15120
Os.33841.1.A1_at--40--5711Chr03:8235211..8235235 (25 bp)
GACTATCCCTGTCATTGCAAGCAGT
LOC_Os03g15120
Os.33841.1.A1_at--1020--7491Chr03:8235188..8235212 (25 bp)
GTGGTGCTGGTACTGTCGAACATTT
LOC_Os03g15120
Os.33841.1.A1_at--1103--4071Chr03:8235172..8235196 (25 bp)
CGAACATTTTTCTGAGGTCTTTGAG
LOC_Os03g15120
Os.33841.1.A1_at--323--5531Chr03:8235148..8235172 (25 bp)
GAAAACAAATGCTTCTGCTGCCCTT
LOC_Os03g15120
Os.33841.1.A1_at--694--9111Chr03:8235124..8235148 (25 bp)
TGCTGCTGGCATTTTCCATCGGAAA
LOC_Os03g15120
Os.33841.1.A1_at--680--2331Chr03:8234818..8234838 (21 bp)
AAAGAGGTTCCGATTTCAGCAGTGA
LOC_Os03g15120
Os.33841.1.A1_at--366--9851Chr03:8234723..8234747 (25 bp)
TAAATCAGGGCTTTGTAACAGTTGT
LOC_Os03g15120
Os.33841.1.A1_at--877--10311Chr03:8234608..8234628 (21 bp)
TTTCTGCCTGTATATTACTTTGTCT
LOC_Os03g15120
Os.33841.1.A1_at--166--1151Chr03:8234542..8234566 (25 bp)
AGTCCCAATTAGTTGCTACTCATGC
NONE
Target Sequence 
GCATGGTACCAGTGCACAGTAAGTGGTGGGCGTGACAGNCCGTCCTATAGGAGCATATGAACTAGCCAAAGCAGTNGAAG
AATTGGGTGCTGGAGAAATANTTCTTAATNNCATTGATTGTGATGNCCAGGNCTGCGGATTTGACATAGATCTGGTAAAA
ATGGTGTCAGATGCTGTGACTATCCCTGTCATTGCAAGCAGTGGTGCTGGTACTGTCGAACATTTTTCTGAGGTCTTTGA
GAAAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGGTTCCGATTTCAGCAGTGAAAGAGCATC
TGGTAGATGCTGGCGTGGAGGTCAGAGTGTAGGATGGAAATCCTTTGATCTATTGGGAAAATAAATCAGGGCTTTGTAAC
AGTTGTGTGTTCTATTTTGGGAATAAGATGGTAATTCATAGGCCATGGATTGGAAATGCAATTTCGTAATAAATTGTTTG
AAATCTTCTGTTNGATTTTTTTTCTGCCTGTATATTACTTTGTCTTTTCTTATATCAGACAAAGCTAGAAAAACTAATTC
AGTCCCAATTAGTTGCTACTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33841.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis