Browse Element(s) Details


OsAffx.3247.1.S1_at

Description tigr:9631.m01451
TID=OsAffx.3247.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1507010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15040Os.26769.1.S1_at11/113+8191551..8197199FAR1 family protein, expressed
LOC_Os03g15050Os.12699.1.S1_at11/113+8197917..8203180Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os03g15060NANA3+8206005..8208829hypothetical protein
LOC_Os03g15070OsAffx.3247.1.S1_at10/113+8216807..8219738hypothetical protein
LOC_Os03g15080Os.49583.1.S1_at11/113+8220585..8221555expressed protein
LOC_Os03g15090OsAffx.25091.1.S1_at11/113+8226667..8227302hypothetical protein
LOC_Os03g15100NANA3+8227607..8228455hypothetical protein
LOC_Os03g15110Os.27141.1.S1_at11/113+8230197..8232456expressed protein
LOC_Os03g15110Os.57365.1.S1_at10/113+8230197..8232456expressed protein
LOC_Os03g15110OsAffx.28452.1.S1_x_at7/113+8230197..8232456expressed protein
LOC_Os03g15120Os.33841.1.A1_at10/113+8234542..8239849Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
LOC_Os03g15120OsAffx.13488.1.S1_at2/113+8234542..8239849Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
LOC_Os03g15130OsAffx.25093.1.S1_at11/113+8244399..8244707hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3247.1.S1_at--366--1511Chr03:8219256..8219280 (25 bp)
AGCAGCAATCCACTGTCGGCGCCGA
LOC_Os03g15070
OsAffx.3247.1.S1_at--176--8411Chr03:8219239..8219263 (25 bp)
GGCGCCGATCTCCACAATGGAAGTT
LOC_Os03g15070
OsAffx.3247.1.S1_at--1040--3191Chr03:8219225..8219249 (25 bp)
CAATGGAAGTTTGTGTCCTCCTCTT
LOC_Os03g15070
OsAffx.3247.1.S1_at--201--5191Chr03:8219101..8219125 (25 bp)
GCAAGGACGCTGTCAAGGTCAGAGA
LOC_Os03g15070
OsAffx.3247.1.S1_at--159--2751NONE
AAGACAAGTCAGAGGGACTCCAGCA
NONE
OsAffx.3247.1.S1_at--129--1071Chr03:8217392..8217416 (25 bp)
AGGGACTCCAGCAGGACCGTCACGA
LOC_Os03g15070
OsAffx.3247.1.S1_at--1145--8071Chr03:8217379..8217403 (25 bp)
GGACCGTCACGACTCGTCCCAAAGT
LOC_Os03g15070
OsAffx.3247.1.S1_at--786--7071Chr03:8217364..8217388 (25 bp)
GTCCCAAAGTCGTCGGACTCGTCCG
LOC_Os03g15070
OsAffx.3247.1.S1_at--856--2011Chr03:8217338..8217362 (25 bp)
ACTCAGCGGGCCCTTGTTCAGATTT
LOC_Os03g15070
OsAffx.3247.1.S1_at--529--8411Chr03:8217330..8217354 (25 bp)
GGCCCTTGTTCAGATTTTCATGTTG
LOC_Os03g15070
OsAffx.3247.1.S1_at--862--6651Chr03:8216837..8217333 (25 bp)
GTTGAAAGACCCGATGTTTTGTGAT
LOC_Os03g15070
Target Sequence 
AGCAGCAATCCACTGTCGGCGCCGATCTCCACAATGGAAGTTTGTGTCCTCCTCTTCCTCCTTCTCGAACCCATCGCCAT
CGTCTTCGTCATCTTCAACGGCCACAATGGCGGGGAAGCAGGTGGGAAGCGGGAGCTCACCCGTTGTCGCCCACGGCAAG
GACGCTGTCAAGGTCAGAGAGCAGCTCGGAGGATGGCGAATGTGGCGGCGAGGGCCGCGATGGTGATGGTGAGGAATAGA
AAAAGGATAAAGGATAGAGGAAAATGGAGGAAAACAGAAGGATTCAAAGCAAAGAAGACAAGTCAGAGGGACTCCAGCAG
GACCGTCACGACTCGTCCCAAAGTCGTCGGACTCGTCCGCACTCAGCGGGCCCTTGTTCAGATTTTCATGTTGAAAGACC
CGATGTTTTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis