Browse Element(s) Details


Os.26769.1.S1_at

Description gb:AK066641.1
DB_XREF= gi:32976659
TID=Os.26769.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072M14, full insert sequence.
FL= gb:AK066641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1504011/11FAR1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15010Os.9532.1.S1_at11/113+8170947..8174224transposon protein, putative, unclassified, expressed
LOC_Os03g15020Os.22360.1.S1_at11/113+8175123..8181097Beta-galactosidase precursor, putative, expressed
LOC_Os03g15020OsAffx.3603.1.S1_at1/113+8175123..8181097Beta-galactosidase precursor, putative, expressed
LOC_Os03g15029NANA3+8189155..8189534NA
LOC_Os03g15040Os.26769.1.S1_at11/113+8191551..8197199FAR1 family protein, expressed
LOC_Os03g15050Os.12699.1.S1_at11/113+8197917..8203180Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os03g15060NANA3+8206005..8208829hypothetical protein
LOC_Os03g15070OsAffx.3247.1.S1_at10/113+8216807..8219738hypothetical protein
LOC_Os03g15080Os.49583.1.S1_at11/113+8220585..8221555expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009639biological_processresponse to red or far red light
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26769.1.S1_at--54--9831Chr03:8196617..8196641 (25 bp)
TAACAGCTTGTCTCACTTGAATTAT
LOC_Os03g15040
Os.26769.1.S1_at--1139--2311Chr03:8196691..8196715 (25 bp)
AAAGAGGGTCGCCTTGCTGTTACAA
LOC_Os03g15040
Os.26769.1.S1_at--1060--251Chr03:8196823..8196847 (25 bp)
ATATGACCACATTTCACGGTTTAAG
LOC_Os03g15040
Os.26769.1.S1_at--970--5211Chr03:8196847..8196871 (25 bp)
GAATTTCACAGACGAAGGTCCAATT
LOC_Os03g15040
Os.26769.1.S1_at--892--5311Chr03:8196860..8196884 (25 bp)
GAAGGTCCAATTCGTGTGCAATAAT
LOC_Os03g15040
Os.26769.1.S1_at--254--391Chr03:8196924..8196948 (25 bp)
ATCACTTTTGCTTTCATTTGAATGG
LOC_Os03g15040
Os.26769.1.S1_at--651--2971Chr03:8196944..8196968 (25 bp)
AATGGTCTCACCAAAACTCCTGCAA
LOC_Os03g15040
Os.26769.1.S1_at--247--6671Chr03:8196993..8197017 (25 bp)
GTTGCAAATGGTTCCTTCCATGCTA
LOC_Os03g15040
Os.26769.1.S1_at--627--4331Chr03:8197010..8197034 (25 bp)
CCATGCTAACATCTCCATTCTTGAA
LOC_Os03g15040
Os.26769.1.S1_at--520--6291Chr03:8197137..8197161 (25 bp)
GATGATGTCGAGCACCACAACGTTT
LOC_Os03g15040
Os.26769.1.S1_at--611--9971Chr03:8197161..8197185 (25 bp)
TACCTGGTGTCGTTCATTTCTTTGA
LOC_Os03g15040
Target Sequence 
TAACAGCTTGTCTCACTTGAATTATAGATTCTAATTGTGATAACTCAAATAATTTACTTCAATAAAGGACTTGTAAAGAG
GGTCGCCTTGCTGTTACAATATTTGTGGATAATGTATACATGCACTTTTATAGAAAGAAAACTAATGTCACAGTATCTTN
TATTGAAATTGGGTCCATATGTCTGGAGAAAACATTTAGCCATGTTATATGACCACATTTCACGGTTTAAGAATTTCACA
GACGAAGGTCCAATTCGTGTGCAATAATTAGGGAAAAATCGCTTGTTTTTTTTGACAATTCCTAATATCACTTTTGCTTT
CATTTGAATGGTCTCACCAAAACTCCTGCAAGCTGAAATATAGACAATAGATATGGTTGCAAATGGTTCCTTCCATGCTA
ACATCTCCATTCTTGAAAGCTAGAATTTTCTCAAATAAATTTTCTCTATTTTTTTCTCAAGCTAGTTTAGTTTCTTGAAG
CTGAAGCTCAATTTTGATACTGCAATATAAAGCGTGCGGGATGATGTCGAGCACCACAACGTTTACCTGGTGTCGTTCAT
TTCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis