Browse Element(s) Details


OsAffx.3603.1.S1_at

Description tigr:9631.m05243
TID=OsAffx.3603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g150201/11Beta-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14980Os.18899.1.S1_at11/113+8144880..8153948expressed protein
LOC_Os03g14980OsAffx.18788.1.S1_at1/113+8144880..8153948expressed protein
LOC_Os03g14990Os.17891.1.S1_at11/113+8156809..8160796Chorismate synthase 2, chloroplast precursor, putative, expressed
LOC_Os03g15000Os.18247.1.S1_a_at11/113+8161300..8165799zinc finger family protein, putative, expressed
LOC_Os03g15010Os.9532.1.S1_at11/113+8170947..8174224transposon protein, putative, unclassified, expressed
LOC_Os03g15020Os.22360.1.S1_at11/113+8175123..8181097Beta-galactosidase precursor, putative, expressed
LOC_Os03g15020OsAffx.3603.1.S1_at1/113+8175123..8181097Beta-galactosidase precursor, putative, expressed
LOC_Os03g15029NANA3+8189155..8189534NA
LOC_Os03g15040Os.26769.1.S1_at11/113+8191551..8197199FAR1 family protein, expressed
LOC_Os03g15050Os.12699.1.S1_at11/113+8197917..8203180Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os03g15060NANA3+8206005..8208829hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3603.1.S1_at--848--9871Chr03:30614507..30614531 (25 bp)
TACAGGTACAGCACACGGGACGGGC
NONE
OsAffx.3603.1.S1_at--608--7631Chr03:30614523..30614547 (25 bp)
GGGACGGGCACAACGACACGCAGCA
NONE
OsAffx.3603.1.S1_at--756--2171Chr03:30614538..30614562 (25 bp)
ACACGCAGCACGCACAGGCTAGCAG
NONE
OsAffx.3603.1.S1_at--803--911Chr03:30614553..30614577 (25 bp)
AGGCTAGCAGCTACTACTTCGGTCG
NONE
OsAffx.3603.1.S1_at--114--9911Chr03:30614564..30614588 (25 bp)
TACTACTTCGGTCGCCGCGTGCACA
NONE
OsAffx.3603.1.S1_at--253--2171Chr03:30614586..30614610 (25 bp)
ACACCCGTCTCATCTACAAGAAACA
NONE
OsAffx.3603.1.S1_at--333--1431Chr03:30614604..30614628 (25 bp)
AGAAACAAGAGCTCGAGCTTCCCTC
NONE
OsAffx.3603.1.S1_at--1002--833Chr04:29026406..29026427 (22 bp)
ATGGACCCATTTGTCATTCACTGAC
NONE
OsAffx.3603.1.S1_at--504--132Chr12:23314773..23314797 (25 bp)
ATTCACTGACGCGTTGCTAGCCTTC
NONE
OsAffx.3603.1.S1_at--150--6672Chr12:23314785..23314817 (25 bp)
GTTGCTAGCCTTCGTCTACGACCCA
NONE
OsAffx.3603.1.S1_at--207--2772Chr12:23314878..23314902 (25 bp)
AAGAGGCCGCCCGAATGCGTCGTCG
NONE
Target Sequence 
TACAGGTACAGCACACGGGACGGGCACAACGACACGCAGCACGCACAGGCTAGCAGCTACTACTTCGGTCGCCGCGTGCA
CACCCGTCTCATCTACAAGAAACAAGAGCTCGAGCTTCCCTCGCCAGCGCGTCGCCACGACGACGCGGACGGTGCCCGCG
AGCCGCAGGAGGCCAATGAATGGACCCATTTGTCATTCACTGACGCGTTGCTAGCCTTCGTCTACGACCCACCCACCCAC
GGCGCTGCTGCCCTCGAGGACGTCCTCGCCCCGCTACCCGGCGCCGACCTACGCACCGACAAGAGGCCGCCCGAATGCGT
CGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis