Browse Element(s) Details


Os.18247.1.S1_a_at

Description gb:AK100160.1
DB_XREF= gi:32985369
TID=Os.18247.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020P04, full insert sequence.
FL= gb:AK100160.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1500011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14959NANA3+8138940..8139888NA
LOC_Os03g14968NANA3+8142515..8142677NA
LOC_Os03g14980Os.18899.1.S1_at11/113+8144880..8153948expressed protein
LOC_Os03g14980OsAffx.18788.1.S1_at1/113+8144880..8153948expressed protein
LOC_Os03g14990Os.17891.1.S1_at11/113+8156809..8160796Chorismate synthase 2, chloroplast precursor, putative, expressed
LOC_Os03g15000Os.18247.1.S1_a_at11/113+8161300..8165799zinc finger family protein, putative, expressed
LOC_Os03g15010Os.9532.1.S1_at11/113+8170947..8174224transposon protein, putative, unclassified, expressed
LOC_Os03g15020Os.22360.1.S1_at11/113+8175123..8181097Beta-galactosidase precursor, putative, expressed
LOC_Os03g15020OsAffx.3603.1.S1_at1/113+8175123..8181097Beta-galactosidase precursor, putative, expressed
LOC_Os03g15029NANA3+8189155..8189534NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18247.1.S1_a_at--68--6571Chr03:8161796..8161820 (25 bp)
GATTCACCGATCAAAGTCAACAGCA
LOC_Os03g15000
Os.18247.1.S1_a_at--367--271Chr03:8161674..8161698 (25 bp)
ATATGATCCTAGATTGTGGCCTTCC
LOC_Os03g15000
Os.18247.1.S1_a_at--364--7051Chr03:8161597..8161621 (25 bp)
GTAACAGATGTGTACCTTCCAGTGT
LOC_Os03g15000
Os.18247.1.S1_a_at--1057--6971Chr03:8161586..8161610 (25 bp)
GTACCTTCCAGTGTATGTTAGCATG
LOC_Os03g15000
Os.18247.1.S1_a_at--374--6771Chr03:8161570..8161594 (25 bp)
GTTAGCATGTAAGCTTCTGGCATAA
LOC_Os03g15000
Os.18247.1.S1_a_at--454--8251Chr03:8161552..8161576 (25 bp)
GGCATAATGTGGCTTCCTGACCTGA
LOC_Os03g15000
Os.18247.1.S1_a_at--60--6571Chr03:8161461..8161485 (25 bp)
GATTCATGCGTGTACTATTGCCCTA
LOC_Os03g15000
Os.18247.1.S1_a_at--10--8071Chr03:8161424..8161448 (25 bp)
GGAGAACATCTCATACTTAATGGGA
LOC_Os03g15000
Os.18247.1.S1_a_at--712--8631Chr03:8161404..8161428 (25 bp)
TGGGATTTCCCTCCATCAGGAGTAA
LOC_Os03g15000
Os.18247.1.S1_a_at--285--6231Chr03:8161365..8161389 (25 bp)
GATGGACTCCAGATTTGTACAAAAT
LOC_Os03g15000
Os.18247.1.S1_a_at--918--7031Chr03:8161349..8161373 (25 bp)
GTACAAAATTTCCTCATGATTCTCA
LOC_Os03g15000
Target Sequence 
GATTCACCGATCAAAGTCAACAGCAAAGCCGAAGAGCATCAGCAGCAGCCATCCCAATCGCTGCCAATCCCACACAGGGA
AGAGGTGTNGCTGCGACAATGTCGGGCGCATATGATCATGATATATGATCCTAGATTGTGGCCTTCCGACCTTCCCCGTA
TCGCGCTCTGCGCTCTCGCCTTGAGCATGGGGAGGAGATGTAACAGATGTGTACCTTCCAGTGTATGTTAGCATGTAAGC
TTCTGGCATAATGTGGCTTCCTGACCTGACCTGTGTGGGTGAAGGTCTTAGATGCCAAGAGGAGTGGAGTGGGTGTACCA
TNTACACATCACATGGATTCATGCGTGTACTATTGCCCTAACCTGAAGAAGTGGAGAACATCTCATACTTAATGGGATTT
CCCTCCATCAGGAGTAAAAAGAGTTACAGCAGATGGACTCCAGATTTGTACAAAATTTCCTCATGATTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18247.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis