Browse Element(s) Details


Os.9532.1.S1_at

Description gb:AK101625.1
DB_XREF= gi:32986834
TID=Os.9532.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052M07, full insert sequence.
FL= gb:AK101625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1501011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14980Os.18899.1.S1_at11/113+8144880..8153948expressed protein
LOC_Os03g14980OsAffx.18788.1.S1_at1/113+8144880..8153948expressed protein
LOC_Os03g14990Os.17891.1.S1_at11/113+8156809..8160796Chorismate synthase 2, chloroplast precursor, putative, expressed
LOC_Os03g15000Os.18247.1.S1_a_at11/113+8161300..8165799zinc finger family protein, putative, expressed
LOC_Os03g15010Os.9532.1.S1_at11/113+8170947..8174224transposon protein, putative, unclassified, expressed
LOC_Os03g15020Os.22360.1.S1_at11/113+8175123..8181097Beta-galactosidase precursor, putative, expressed
LOC_Os03g15020OsAffx.3603.1.S1_at1/113+8175123..8181097Beta-galactosidase precursor, putative, expressed
LOC_Os03g15029NANA3+8189155..8189534NA
LOC_Os03g15040Os.26769.1.S1_at11/113+8191551..8197199FAR1 family protein, expressed
LOC_Os03g15050Os.12699.1.S1_at11/113+8197917..8203180Phosphoenolpyruvate carboxykinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9532.1.S1_at--895--8831Chr03:8173637..8173661 (25 bp)
TGATATGAACCTGGCATCTTCGCAT
LOC_Os03g15010
Os.9532.1.S1_at--1100--8271Chr03:8173649..8173673 (25 bp)
GGCATCTTCGCATCTGATACAAGGG
LOC_Os03g15010
Os.9532.1.S1_at--856--10111Chr03:8173688..8173712 (25 bp)
TATGAATATGACATCCCCTCACTTG
LOC_Os03g15010
Os.9532.1.S1_at--589--5231Chr03:8173739..8173763 (25 bp)
GAATATGGTATCTACTGCTCAGAAT
LOC_Os03g15010
Os.9532.1.S1_at--186--2971Chr03:8173761..8173785 (25 bp)
AATGGAATGCACTCTTTTGATTTGG
LOC_Os03g15010
Os.9532.1.S1_at--1110--2311Chr03:8173801..8173825 (25 bp)
AAAGTGGTCCTTTGCCAATGGCTGC
LOC_Os03g15010
Os.9532.1.S1_at--55--9971Chr03:8173863..8173887 (25 bp)
TACCATCCAAAACAACTCCTCAATA
LOC_Os03g15010
Os.9532.1.S1_at--911--6831Chr03:8173973..8173997 (25 bp)
GTTTCTTGTCTAGAGACCCACTATG
LOC_Os03g15010
Os.9532.1.S1_at--662--6031Chr03:8174019..8174043 (25 bp)
GAGATGCCTTTCCTTATTTTATATT
LOC_Os03g15010
Os.9532.1.S1_at--1100--8751Chr03:8174048..8174072 (25 bp)
TGTATGTTCCTACAGCAGGCAGCAA
LOC_Os03g15010
Os.9532.1.S1_at--596--9131Chr03:8174114..8174138 (25 bp)
TGCTGGTAGCTTTGTTGTTGTATCC
LOC_Os03g15010
Target Sequence 
TGATATGAACCTGGCATCTTCGCATCTGATACAAGGGGACAGAAGAGTTGATATGAATATGACATCCCCTCACTTGATAC
AAGGTGACACCAGAGTGGATATGAATATGGTATCTACTGCTCAGAATGGAATGCACTCTTTTGATTTGGTGAATGTGAAC
CTAGAAAGTGGTCCTTTGCCAATGGCTGCAACTGATTTCATGCAAATGCATCAGCACCCACCCGTTTACCATCCAAAACA
ACTCCTCAATATGAGAGATCAGGTGATGGACACAAATAAGAGGCCCAATATGGAAACAAACACATACTTTATGGGAGGTG
GAATGCATGTGGGATAGTTTCTTGTCTAGAGACCCACTATGTAATCTTTTCTGTTTGGAAAGGAGATGCCTTTCCTTATT
TTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAATCAATTAGGTTGTAGTAATTGCAGATTAATCTTGCAGTGC
TGGTAGCTTTGTTGTTGTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis