Browse Element(s) Details


Os.27141.1.S1_at

Description gb:AK073375.1
DB_XREF= gi:32983398
TID=Os.27141.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028M15, full insert sequence.
FL= gb:AK073375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4623011/11retrotransposon protein, putative, unclassified
LOC_Os03g1511011/11expressed protein
LOC_Os08g1948011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46180OsAffx.13377.1.S1_at11/113+26069175..26070086Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g46190Os.53913.1.S1_at11/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46190OsAffx.13378.1.S1_at10/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46200OsAffx.25574.2.S1_x_at11/113+26074117..26074728acetyltransferase, GNAT family protein, expressed
LOC_Os03g46220NANA3+26082364..26088141retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.27141.1.S1_at11/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.57365.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_x_at9/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.28943.1.S1_x_at4/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46240OsAffx.13379.1.S1_at11/113+26098221..26098454hypothetical protein
LOC_Os03g46250OsAffx.25575.1.S1_at11/113+26101813..26102757acetyltransferase, GNAT family protein, expressed
LOC_Os03g46260Os.7531.1.S1_at10/113+26106267..26109634expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27141.1.S1_at--969--3075Chr08:11635190..11635214 (25 bp)
AATCAGTTTGTTCCCATAGTTTGTG
LOC_Os08g19480
Os.27141.1.S1_at--23--10755Chr08:11635222..11635246 (25 bp)
TTGCAATCCTTGCTGCTTGTAAATT
LOC_Os08g19480
Os.27141.1.S1_at--1106--6795Chr08:11635388..11635412 (25 bp)
GTTATTGACACTTATCCTGCACATT
LOC_Os08g19480
Os.27141.1.S1_at--756--9255Chr08:11635402..11635426 (25 bp)
TCCTGCACATTTGACACTGATCTTC
LOC_Os08g19480
Os.27141.1.S1_at--130--10195Chr08:11635495..11635519 (25 bp)
TATATCTGACCCTTAATACTTTTGT
LOC_Os08g19480
Os.27141.1.S1_at--416--335Chr08:11635510..11635534 (25 bp)
ATACTTTTGTCTTTCTGATAATCTG
LOC_Os08g19480
Os.27141.1.S1_at--647--9095Chr08:11635550..11635574 (25 bp)
TGCTCAACTTATCATGGCGGTCACA
LOC_Os08g19480
Os.27141.1.S1_at--702--1075Chr08:11635603..11635627 (25 bp)
AGGGAAATGCCTTGCCTGTTGTAGA
LOC_Os08g19480
Os.27141.1.S1_at--946--4475Chr08:11635616..11635640 (25 bp)
GCCTGTTGTAGATTTGCCATCGTTT
LOC_Os08g19480
Os.27141.1.S1_at--724--5954Chr08:11635665..11635689 (25 bp)
GAGAATTTCTCTTTTTGTACAACTA
LOC_Os08g19480
Os.27141.1.S1_at--133--2535Chr08:11635685..11635709 (25 bp)
AACTAACCTATGTACATGGCATTTG
LOC_Os08g19480
Target Sequence 
AATCAGTTTGTTCCCATAGTTTGTGAGATAAATTGCAATCCTTGCTGCTTGTAAATTGTAATTGAATCTGTTACGATTGC
AATTATACTGCTTCAACATAAATTTCTCATAAAATGGAACTGGTAATTTAATATTGGTGGATTGTGAGAATATCGAAGCT
ATGCTACAGATTGAATTAAATGGAACTACATCAGTTATGTTATTGACACTTATCCTGCACATTTGACACTGATCTTCAAT
TCTGTATTGAAATAGTAGGTGTTGCATAGATTACTTATCATTNAATGGAGTATTATTATAATCTATATATCTGACCCTTA
ATACTTTTGTCTTTCTGATAATCTGATTCAAGTTTTTAGATGCTCAACTTATCATGGCGGTCACAAGATATTTTGGAGTG
GCATTTCTCTNCAAGGGAAATGCCTTGCCTGTTGTAGATTTGCCATCGTTTTGTCTCATTTTGTAGATTGTATAGGAGAA
TTTCTCTTTTTGTACAACTAACCTATGTACATGGCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis