Browse Element(s) Details


OsAffx.13379.1.S1_at

Description tigr:9631.m04486
TID=OsAffx.13379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4624011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46190Os.53913.1.S1_at11/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46190OsAffx.13378.1.S1_at10/113+26070111..26073838RNA pol II accessory factor, Cdc73 family protein, expressed
LOC_Os03g46200OsAffx.25574.2.S1_x_at11/113+26074117..26074728acetyltransferase, GNAT family protein, expressed
LOC_Os03g46220NANA3+26082364..26088141retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.27141.1.S1_at11/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.57365.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_x_at9/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.28943.1.S1_x_at4/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46240OsAffx.13379.1.S1_at11/113+26098221..26098454hypothetical protein
LOC_Os03g46250OsAffx.25575.1.S1_at11/113+26101813..26102757acetyltransferase, GNAT family protein, expressed
LOC_Os03g46260Os.7531.1.S1_at10/113+26106267..26109634expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13379.1.S1_at--1060--3211Chr03:26098262..26098286 (25 bp)
CAAGGGCGATGAAGAGGGATTTCTA
LOC_Os03g46240
OsAffx.13379.1.S1_at--38--1071Chr03:26098276..26098375 (25 bp)
AGGGATTTCTAAATGAGTCCTCCAG
LOC_Os03g46240
OsAffx.13379.1.S1_at--350--6491Chr03:26098279..26098378 (25 bp)
GATTTCTAAATGAGTCCTCCAGGGT
LOC_Os03g46240
OsAffx.13379.1.S1_at--301--10311Chr03:26098281..26098380 (25 bp)
TTTCTAAATGAGTCCTCCAGGGTAT
LOC_Os03g46240
OsAffx.13379.1.S1_at--588--2291Chr03:26098365..26098385 (21 bp)
AAATGAGTCCTCCAGGGTATACCTT
LOC_Os03g46240
OsAffx.13379.1.S1_at--797--671Chr03:26098365..26098387 (23 bp)
ATGAGTCCTCCAGGGTATACCTTAT
LOC_Os03g46240
OsAffx.13379.1.S1_at--327--6111Chr03:26098365..26098389 (25 bp)
GAGTCCTCCAGGGTATACCTTATTG
LOC_Os03g46240
OsAffx.13379.1.S1_at--802--7251Chr03:26098367..26098391 (25 bp)
GTCCTCCAGGGTATACCTTATTGTT
LOC_Os03g46240
OsAffx.13379.1.S1_at--394--4271Chr03:26098369..26098393 (25 bp)
CCTCCAGGGTATACCTTATTGTTTG
LOC_Os03g46240
OsAffx.13379.1.S1_at--512--3451Chr03:26098373..26098397 (25 bp)
CAGGGTATACCTTATTGTTTGGGAG
LOC_Os03g46240
OsAffx.13379.1.S1_at--994--7871Chr03:26098400..26098424 (25 bp)
GGTTATTGGCCCCCATGTGAAATTT
LOC_Os03g46240
Target Sequence 
CAAGGGCGATGAAGAGGGATTTCTAAATGAGTCCTCCAGGGTATACCTTATTGTTTGGGAGGGGGTTATTGGCCCCCATG
TGAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis