Browse Element(s) Details


OsAffx.28452.1.S1_at

Description tigr:9634.m03836
TID=OsAffx.28452.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1948010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g4623010/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19440OsAffx.1646.1.S1_x_at1/118+11607169..11608996retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450OsAffx.22722.1.S1_at4/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450Os.45173.1.S1_x_at3/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450OsAffx.22722.1.S1_x_at2/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450Os.38764.1.S1_x_at1/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19460OsAffx.22171.1.S1_at1/118+11616580..11619009retrotransposon protein, putative, unclassified
LOC_Os08g19470OsAffx.29276.1.S1_at11/118+11624048..11625058hypothetical protein
LOC_Os08g19480OsAffx.28452.1.S1_x_at11/118+11632016..11636192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19480Os.27141.1.S1_at11/118+11632016..11636192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19480OsAffx.28452.1.S1_at10/118+11632016..11636192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19480Os.57365.1.S1_at9/118+11632016..11636192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19490NANA8+11637601..11638277hypothetical protein
LOC_Os08g19500NANA8+11642521..11645812retrotransposon protein, putative, unclassified
LOC_Os08g19510OsAffx.31869.1.S1_at8/118+11652074..11653189retrotransposon protein, putative, unclassified
LOC_Os08g19510OsAffx.31869.5.S1_x_at5/118+11652074..11653189retrotransposon protein, putative, unclassified
LOC_Os08g19510OsAffx.31869.4.S1_x_at2/118+11652074..11653189retrotransposon protein, putative, unclassified
LOC_Os08g19510OsAffx.31869.4.S1_at1/118+11652074..11653189retrotransposon protein, putative, unclassified
LOC_Os08g19510OsAffx.31869.3.S1_s_at1/118+11652074..11653189retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28452.1.S1_at--959--7591Chr06:23796882..23796906 (25 bp)
GGGCACACTAACAGAATATATGTTA
NONE
OsAffx.28452.1.S1_at--715--5515Chr08:11635861..11635885 (25 bp)
GAAAAACTGATATATGCAAACTGCG
LOC_Os08g19480
OsAffx.28452.1.S1_at--246--10196Chr08:11635871..11635895 (25 bp)
TATATGCAAACTGCGTATCTGTCAG
LOC_Os08g19480
OsAffx.28452.1.S1_at--808--655Chr08:11635874..11635898 (25 bp)
ATGCAAACTGCGTATCTGTCAGTAA
LOC_Os08g19480
OsAffx.28452.1.S1_at--971--2375Chr08:11635878..11635902 (25 bp)
AAACTGCGTATCTGTCAGTAATCCG
LOC_Os08g19480
OsAffx.28452.1.S1_at--321--3835Chr08:11635881..11635905 (25 bp)
CTGCGTATCTGTCAGTAATCCGTTA
LOC_Os08g19480
OsAffx.28452.1.S1_at--1153--4015Chr08:11635884..11635908 (25 bp)
CGTATCTGTCAGTAATCCGTTAACT
LOC_Os08g19480
OsAffx.28452.1.S1_at--78--415Chr08:11635887..11635911 (25 bp)
ATCTGTCAGTAATCCGTTAACTGTC
LOC_Os08g19480
OsAffx.28452.1.S1_at--979--7115Chr08:11635891..11635915 (25 bp)
GTCAGTAATCCGTTAACTGTCGGTA
LOC_Os08g19480
OsAffx.28452.1.S1_at--857--6735Chr08:11635902..11635926 (25 bp)
GTTAACTGTCGGTAAAGGACCATCT
LOC_Os08g19480
OsAffx.28452.1.S1_at--835--10475Chr08:11635903..11635927 (25 bp)
TTAACTGTCGGTAAAGGACCATCTG
LOC_Os08g19480
Target Sequence 
GGGCACACTAACAGAATATATGTTAGAAAAACTGATATATGCAAACTGCGTATCTGTCAGTAATCCGTTAACTGTCGGTA
AAGGACCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis