Browse Element(s) Details


Os.55653.1.S1_at

Description gb:AK108494.1
DB_XREF= gi:32993703
TID=Os.55653.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G06, full insert sequence.
FL= gb:AK108494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g335908/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33560Os.49660.1.S1_at10/112+19956730..19962055expressed protein
LOC_Os02g33570OsAffx.2843.1.S1_at11/112+19965631..19966110hypothetical protein
LOC_Os02g33580Os.27821.1.S1_s_at11/112+19967319..19971585digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os02g33590Os.55653.1.S1_at8/112+19975666..19977308U-box domain containing protein, expressed
LOC_Os02g33590OsAffx.19551.1.S1_x_at5/112+19975666..19977308U-box domain containing protein, expressed
LOC_Os02g33600NANA2+19995126..19995953VQ motif family protein
LOC_Os02g33610Os.50951.1.S1_at11/112+20000095..20007983RNA-metabolising metallo-beta-lactamase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55653.1.S1_at--399--611Chr02:19975932..19975956 (25 bp)
ATGCTCAGGGCGAACGCTAGGGTTT
LOC_Os02g33590
Os.55653.1.S1_at--1108--10071Chr02:19975915..19975939 (25 bp)
TAGGGTTTGGAAGGACTCGCCATGC
LOC_Os02g33590
Os.55653.1.S1_at--1162--3511Chr02:19975895..19975919 (25 bp)
CATGCTTGCAAGCTCACCTTAAGGC
LOC_Os02g33590
Os.55653.1.S1_at--1064--5151Chr02:19975888..19975912 (25 bp)
GCAAGCTCACCTTAAGGCTTCTTAC
LOC_Os02g33590
Os.55653.1.S1_at--1129--10551Chr02:19975870..19975894 (25 bp)
TTCTTACCCCTCCTGATCATTTCAT
LOC_Os02g33590
Os.55653.1.S1_at--18--431Chr02:19975855..19975879 (25 bp)
ATCATTTCATCACCATCACATCCAT
LOC_Os02g33590
Os.55653.1.S1_at--928--572Chr02:12232295..12232693 (25 bp)
ATCCATCCACCGATCTATTAATTAT
NONE
Os.55653.1.S1_at--121--3171NONE
AATTGCTAAGAGGAGCACGTGCTTT
NONE
Os.55653.1.S1_at--592--8071NONE
GGAGCACGTGCTTTAATTTGCACTC
NONE
Os.55653.1.S1_at--304--3111Chr02:19975782..19975806 (25 bp)
AATTTGCACTCCTCTTAGTAGTTAA
LOC_Os02g33590
Os.55653.1.S1_at--1126--331Chr02:19975666..19975690 (25 bp)
ATACACTATAAATCTTTCATTGCCT
NONE
Target Sequence 
ATGCTCAGGGCGAACGCTAGGGTTTGGAAGGACTCGCCATGCTTGCAAGCTCACCTTAAGGCTTCTTACCCCTCCTGATC
ATTTCATCACCATCACATCCATCCACCGATCTATTAATTATTATTAATTGCTAAGAGGAGCACGTGCTTTAATTTGCACT
CCTCTTAGTAGTTAATTAGATTTTGTGATTACTTTTAGTTCTTTAATTTGTTTATGATCTGAATGTACAAAATACACTGT
AAATCTTTCATTAATTCTGTACAAAAATACACTATAAATCTTTCATTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis