Browse Element(s) Details


Os.55671.1.S1_at

Description gb:AK108530.1
DB_XREF= gi:32993739
TID=Os.55671.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-C02, full insert sequence.
FL= gb:AK108530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4425010/11Haemolysin-III related family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44210Os.46083.1.S1_a_at11/116+26664154..26668595protein phosphatase type-2C, putative, expressed
LOC_Os06g44220Os.55687.1.S1_at1/116+26675856..26676198Uncharacterized protein family protein
LOC_Os06g44230Os.4148.1.S2_a_at11/116+26679172..26689052DNA-directed RNA polymerase 3, chloroplast precursor, putative, expressed
LOC_Os06g44240OsAffx.28096.1.S1_at11/116+26689717..26691642hypothetical protein
LOC_Os06g44250Os.55671.1.S1_at10/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44250OsAffx.15962.1.S1_at2/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44260OsAffx.15920.1.S1_at11/116+26697965..26699045RmlD substrate binding domain containing protein, expressed
LOC_Os06g44270Os.53321.1.S1_at11/116+26707020..26708889expressed protein
LOC_Os06g44270OsAffx.20617.1.A1_x_at1/116+26707020..26708889expressed protein
LOC_Os06g44280Os.18683.1.S1_at11/116+26713871..26716573retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55671.1.S1_at--406--1811Chr06:26692990..26693014 (25 bp)
ACCCGGAGTGCTACCTGGCGCTGTC
LOC_Os06g44250
Os.55671.1.S1_at--340--8291Chr06:26692749..26692773 (25 bp)
GGCATTTTTGTGACCCGCCATGGCA
LOC_Os06g44250
Os.55671.1.S1_at--315--1811Chr06:26692737..26692761 (25 bp)
ACCCGCCATGGCAGGATGTGTATGT
LOC_Os06g44250
Os.55671.1.S1_at--743--10111Chr06:26692713..26692737 (25 bp)
TATGTGCGTGCCATTGATTATTCCT
LOC_Os06g44250
Os.55671.1.S1_at--825--6951Chr06:26692668..26692692 (25 bp)
GTAGCACAGGTGATTCTTTGGACTC
LOC_Os06g44250
Os.55671.1.S1_at--732--7751Chr06:26692660..26692684 (25 bp)
GGTGATTCTTTGGACTCTGACATAT
LOC_Os06g44250
Os.55671.1.S1_at--975--3851Chr06:26692644..26692668 (25 bp)
CTGACATATCAGAAGTTCGTTGGGT
LOC_Os06g44250
Os.55671.1.S1_at--157--5571Chr06:26692555..26692579 (25 bp)
GAAAGCATACGAGGCTCTGATAGTA
LOC_Os06g44250
Os.55671.1.S1_at--212--8331Chr06:26692543..26692567 (25 bp)
GGCTCTGATAGTAACTCAATCTTAA
LOC_Os06g44250
Os.55671.1.S1_at--466--10871Chr06:26692505..26692529 (25 bp)
TTGGCCCTCCAACTTAATCGAAACT
LOC_Os06g44250
Os.55671.1.S1_at--777--9731Chr06:26692491..26692515 (25 bp)
TAATCGAAACTTTTGAGGCTTAATT
NONE
Target Sequence 
ACCCGGAGTGCTACCTGGCGCTGTCGCTGGAGCTGGTGATGGGGCTCGTGTACGCCGCCGGCGCGGNGTTCTACGTGGCG
CGCGTGCCNGGANCGGTGGCGNCCGNNCNCGTTCGACTGCGTCGGCCACAGCCACCAGATCTTCCACGTGCTCGTGCTCG
CCGGCGCGCTCACGCACTACGCCGCCACCGCCATCCTCATCGACTGGCGCGAGGCGGCGATCGCCGCCGGCGGCGGCGCC
GCGGCATTTTTGTGACCCGCCATGGCAGGATGTGTATGTATGTGCGTGCCATTGATTATTCCTTCATTATTTTTTTATGT
GACGTAGCACAGGTGATTCTTTGGACTCTGACATATCAGAAGTTCGTTGGGTTGAAACTGTGAATGTGAATGTAGAAGAT
GGGCTTCAAGCCTTGAAAAGAAACTGTATTGCAAAAGAAAGCATACGAGGCTCTGATAGTAACTCAATCTTAAGAATGCA
TTTCAATTGGCCCTCCAACTTAATCGAAACTTTTGAGGCTTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis