Browse Element(s) Details


Os.55674.1.S1_at

Description gb:AK108536.1
DB_XREF= gi:32993745
TID=Os.55674.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.55674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-C08, full insert sequence.
FL= gb:AK108536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4683011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46780Os.12959.1.S1_at11/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46780OsAffx.15132.1.S1_at7/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46790OsAffx.27346.1.S1_at11/115+27018323..27018883expressed protein
LOC_Os05g46800Os.5308.1.S1_at5/115+27020518..27022416hypothetical protein
LOC_Os05g46810NANA5+27027624..27031523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g46820OsAffx.15131.1.S1_at11/115+27034055..27035050hypothetical protein
LOC_Os05g46830Os.55674.1.S1_at11/115+27035850..27037053expressed protein
LOC_Os05g46840Os.55984.1.S1_at11/115+27038710..27039629expressed protein
LOC_Os05g46860OsAffx.15132.1.S1_at11/115+27042409..27043990Smad nuclear interacting protein 1, putative
LOC_Os05g46874OsAffx.4644.1.S1_at11/115+27046488..27051554hypothetical protein
LOC_Os05g46874OsAffx.27347.1.S1_at11/115+27046488..27051554hypothetical protein
LOC_Os05g46890Os.5308.1.S1_at11/115+27055830..27058840expressed protein
LOC_Os05g46900OsAffx.15133.1.S1_at11/115+27060894..27061094hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55674.1.S1_at--599--8351Chr05:27036603..27036627 (25 bp)
GGCGGACTCGGAGCCTGAAACGATC
LOC_Os05g46830
Os.55674.1.S1_at--323--2591Chr05:27036621..27036645 (25 bp)
AACGATCGAGAGCTCGACACCGAGA
LOC_Os05g46830
Os.55674.1.S1_at--404--8751Chr05:27036689..27036713 (25 bp)
TGTACGCATACAGAAGCAAAGCTAT
LOC_Os05g46830
Os.55674.1.S1_at--590--2851Chr05:27036784..27036808 (25 bp)
AAGTGTCGTAGCAGAGTCTAGGTAA
LOC_Os05g46830
Os.55674.1.S1_at--1039--7051Chr05:27036805..27036829 (25 bp)
GTAAGTAGACACCAGCTGAGCAAAA
LOC_Os05g46830
Os.55674.1.S1_at--566--2031Chr05:27036832..27036856 (25 bp)
ACTAGCTGGCTAGTAGCTGCACGTT
LOC_Os05g46830
Os.55674.1.S1_at--94--1611Chr05:27036846..27036870 (25 bp)
AGCTGCACGTTGTTGCGTCGCTCAA
LOC_Os05g46830
Os.55674.1.S1_at--603--7071Chr05:27036891..27036915 (25 bp)
GTAATTATAATCTCTCTGTGGCCAA
LOC_Os05g46830
Os.55674.1.S1_at--1043--351Chr05:27036897..27036921 (25 bp)
ATAATCTCTCTGTGGCCAATTGGCG
LOC_Os05g46830
Os.55674.1.S1_at--415--8451Chr05:27036910..27036934 (25 bp)
GGCCAATTGGCGCAGTATATGCATA
LOC_Os05g46830
Os.55674.1.S1_at--466--2451Chr05:27037015..27037040 (25 bp)
AAAATACATCCTCTGTATCACCCAC
LOC_Os05g46830
Target Sequence 
GGCGGACTCGGAGCCTGAAACGATCGAGAGCTCGACACCGAGAAGAAGAGATATATACGAGAGAGTTGTACTTGTACGTG
TATATTTGTACGCATACAGAAGCAAAGCTATAGGCAAGTATGTATACGGTATAACGACTGTATAATCGTATATATTGTAT
AGTCGTTTTTTATTTAATTATAAGTGTCGTAGCAGAGTCTAGGTAAGTAGACACCAGCTGAGCAAAAAGACTAGCTGGCT
AGTAGCTGCACGTTGTTGCGTCGCTCAACTACGAANAATGGAGATGCAGTAATTATAATCTCTCTGTGGCCAATTGGCGC
AGTATATGCATATATATATACACGGTGGTGAATCCGGCTGGAATCAGAGGATAGATTTAAAGTCTAAATCTTTTTTGTTA
AAAAAAAGATNAAAATACATCCTCTGTATCACCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis