Browse Element(s) Details


Os.55700.1.S1_at

Description gb:AK108597.1
DB_XREF= gi:32993806
TID=Os.55700.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E03, full insert sequence.
FL= gb:AK108597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g561609/11Plasma membrane ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56140Os.17447.1.S1_at11/114+33210026..33217145expressed protein
LOC_Os04g56150NANA4+33218121..33218690ethylene response factor 1, putative
LOC_Os04g56160Os.12328.1.S1_at11/114+33238676..33245782Plasma membrane ATPase, putative, expressed
LOC_Os04g56160Os.55700.1.S1_at9/114+33238676..33245782Plasma membrane ATPase, putative, expressed
LOC_Os04g56170Os.52576.1.S1_at11/114+33269440..33273790LIGULELESS1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55700.1.S1_at--1041--471NONE
ATCTGGTAAGAAAATCACTCGCCGC
NONE
Os.55700.1.S1_at--522--9771Chr10:14768860..14768961 (25 bp)
TAAGAAAATCACTCGCCGCCACCAG
NONE
Os.55700.1.S1_at--79--3771Chr04:33239081..33239105 (25 bp)
CTCTCGCGTGTTGGGTTGCTTAGGC
LOC_Os04g56160
Os.55700.1.S1_at--708--7371Chr04:33239088..33239112 (25 bp)
GTGTTGGGTTGCTTAGGCTTTAGCT
LOC_Os04g56160
Os.55700.1.S1_at--679--891Chr04:33239102..33239126 (25 bp)
AGGCTTTAGCTCTAGCTTTAGTTCT
LOC_Os04g56160
Os.55700.1.S1_at--363--6731Chr04:33239122..33239146 (25 bp)
GTTCTTACCATTTTTGACTGGCGAT
LOC_Os04g56160
Os.55700.1.S1_at--1--9971Chr04:33239127..33239151 (25 bp)
TACCATTTTTGACTGGCGATAGAAA
LOC_Os04g56160
Os.55700.1.S1_at--733--5511Chr04:33239165..33239189 (25 bp)
GAAAATTAATGATACCGGCTAGCTG
LOC_Os04g56160
Os.55700.1.S1_at--922--2991Chr04:33239172..33239196 (25 bp)
AATGATACCGGCTAGCTGGAGCTGA
LOC_Os04g56160
Os.55700.1.S1_at--1003--4711Chr04:33239186..33239210 (25 bp)
GCTGGAGCTGAGTAGATTTCTGATA
LOC_Os04g56160
Os.55700.1.S1_at--1028--6071Chr04:33239195..33239219 (25 bp)
GAGTAGATTTCTGATACGCTTAATA
LOC_Os04g56160
Target Sequence 
ATCTGGTAAGAAAATCACTCGCCGCCACCAGCTACCTACTACTTCTTCTTCCTCGCTTCCTCCCTCTCGCGTGTTGGGTT
GCTTAGGCTTTAGCTCTAGCTTTAGTTCTTACCATTTTTGACTGGCGATAGAAATAGTCTGAGAATTGAAAATTAATGAT
ACCGGCTAGCTGGAGCTGAGTAGATTTCTGATACGCTTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis