Browse Element(s) Details


Os.55718.1.S1_at

Description gb:AK108649.1
DB_XREF= gi:32993858
TID=Os.55718.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-C04, full insert sequence.
FL= gb:AK108649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4432011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44290OsAffx.20116.1.S1_at11/1112+27417687..27419435Cytochrome P450 family protein, expressed
LOC_Os12g44300OsAffx.32187.1.S1_s_at11/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44300Os.10071.1.S1_at6/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44310Os.10598.1.S1_at10/1112+27431232..274384309,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed
LOC_Os12g44320OsAffx.20117.1.S1_s_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_x_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44330Os.17376.2.S1_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44330Os.17376.2.S1_x_at11/1112+27446516..27452843Protein kinase domain containing protein, expressed
LOC_Os12g44340Os.26364.1.S1_at11/1112+27453510..27457977expressed protein
LOC_Os12g44350Os.6379.1.S1_at1/1112+27458264..27459555Actin-1, putative, expressed
LOC_Os12g44360Os.53872.1.S1_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed
LOC_Os12g44360Os.7094.1.S1_a_at11/1112+27462128..27474827Plasma membrane Na+/H+ antiporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55718.1.S1_at--223--9431Chr12:27443550..27443574 (25 bp)
TCGGGCCCCAGATGACATGACACAC
LOC_Os12g44320
Os.55718.1.S1_at--781--4531Chr12:27443554..27443578 (25 bp)
GCCCCAGATGACATGACACACACAT
LOC_Os12g44320
Os.55718.1.S1_at--1054--5651Chr12:27443563..27443587 (25 bp)
GACATGACACACACATTTACTACTG
LOC_Os12g44320
Os.55718.1.S1_at--210--5631Chr12:27443568..27443592 (25 bp)
GACACACACATTTACTACTGTTTTT
LOC_Os12g44320
Os.55718.1.S1_at--925--9551Chr12:27443593..27443617 (25 bp)
TCTTTTTCTTGTGTGAATACTACTG
LOC_Os12g44320
Os.55718.1.S1_at--816--3611Chr12:27443600..27443624 (25 bp)
CTTGTGTGAATACTACTGTAGATTA
LOC_Os12g44320
Os.55718.1.S1_at--546--6551Chr12:27443620..27443644 (25 bp)
GATTATACAGAATATTTTCCATGTT
LOC_Os12g44320
Os.55718.1.S1_at--496--171Chr12:27443633..27443657 (25 bp)
ATTTTCCATGTTGAGCTGCTATTGT
LOC_Os12g44320
Os.55718.1.S1_at--1001--5891Chr12:27443645..27443669 (25 bp)
GAGCTGCTATTGTTGCAGGCAAATC
LOC_Os12g44320
Os.55718.1.S1_at--630--51Chr12:27443653..27443677 (25 bp)
ATTGTTGCAGGCAAATCGCTGCATA
LOC_Os12g44320
Os.55718.1.S1_at--1005--2271Chr12:27443665..27443689 (25 bp)
AAATCGCTGCATATGATTGATCGCT
LOC_Os12g44320
Target Sequence 
TCGGGCCCCAGATGACATGACACACACATTTACTACTGTTTTTTCTTTTTCTTGTGTGAATACTACTGTAGATTATACAG
AATATTTTCCATGTTGAGCTGCTATTGTTGCAGGCAAATCGCTGCATATGATTGATCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis