Browse Element(s) Details


Os.5577.1.S1_at

Description gb:AK104603.1
DB_XREF= gi:32989812
TID=Os.5577.1
CNT=46
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.5577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H06, full insert sequence.
FL= gb:AK068297.1 gb:AK104603.1 gb:AK104746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0830011/11aldehyde dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08290NANA11+4369554..4369871hypothetical protein
LOC_Os11g08300Os.5577.1.S1_at11/1111+4371234..4375946aldehyde dehydrogenase family protein, expressed
LOC_Os11g08314Os.56172.1.S1_at10/1111+4376687..4383287dehydration-responsive protein, putative, expressed
LOC_Os11g08314OsAffx.19544.1.S1_x_at1/1111+4376687..4383287dehydration-responsive protein, putative, expressed
LOC_Os11g08330Os.3738.1.S1_s_at11/1111+4383363..4393710DNA polymerase delta catalytic subunit, putative, expressed
LOC_Os11g08340OsAffx.30879.1.S1_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08340OsAffx.30879.1.S1_x_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009536cellular_componentplastid
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5577.1.S1_at--674--4291Chr11:4374848..4374869 (22 bp)
CCTTACTTCCCATTGTAACAGTTGA
LOC_Os11g08300
Os.5577.1.S1_at--412--6491Chr11:4375201..4375225 (25 bp)
GATAGCATCCAGTTCATCAACTCAA
LOC_Os11g08300
Os.5577.1.S1_at--935--371Chr11:4375216..4375240 (25 bp)
ATCAACTCAAGGACCAAGCCACTTG
LOC_Os11g08300
Os.5577.1.S1_at--967--10731Chr11:4375238..4375262 (25 bp)
TTGCAGCCTATCTTTTCACCAAGGA
LOC_Os11g08300
Os.5577.1.S1_at--118--5231Chr11:4375279..4375303 (25 bp)
GAATTTGTGTCCAATGTCCCAGCAG
LOC_Os11g08300
Os.5577.1.S1_at--1091--2991Chr11:4375318..4375438 (25 bp)
AATGATGTTGCCCTGCATCTCGCCA
LOC_Os11g08300
Os.5577.1.S1_at--574--2211Chr11:4375520..4375544 (25 bp)
ACAAGAAGGCCGTCCTGATCCGCGG
LOC_Os11g08300
Os.5577.1.S1_at--267--8011Chr11:4375554..4375578 (25 bp)
GGAGGCAACTGCTAGGTACCCACCT
LOC_Os11g08300
Os.5577.1.S1_at--535--10271Chr11:4375630..4375654 (25 bp)
TTTGCACTGATTCTTGCCCTCCTGG
LOC_Os11g08300
Os.5577.1.S1_at--880--4911Chr11:4375655..4375679 (25 bp)
GCTTCCCCAAAGAGAGGCGTTAGAA
LOC_Os11g08300
Os.5577.1.S1_at--129--7091Chr11:4375736..4375760 (25 bp)
GTCAATGGAAGCCATTTCCTGCATG
LOC_Os11g08300
Target Sequence 
CCTTACTTCCCATTGTAACAGTTGACAAGATTGAAGATAGCATCCAGTTCATCAACTCAAGGACCAAGCCACTTGCAGCC
TATCTTTTCACCAAGGACAAGAAACTGCAAGAGGAATTTGTGTCCAATGTCCCAGCAGGAGGAATGCTTGTAAATGATGT
TGCCCTGCATCTCGCCAATCCGCACCTGCCATTTGGCGGAGTCGGCGACAGCGGGATCGGCTCCTACCATGGCAAATTCA
GCTTCGATTGTTTCACCCACAAGAAGGCCGTCCTGATCCGCGGCTTCGGAGGGGAGGCAACTGCTAGGTACCCACCTTAC
ACGATTGAGAAGCAGAAGATCCTGAGAGGACTGATAAACGGCAGCTTCTTTGCACTGATTCTTGCCCTCCTGGGCTTCCC
CAAAGAGAGGCGTTAGAAAACTTTCAGTAGTTTCAGTACAGTACTTGTGCATTTGAGTGAGTGCAGGCCATGCTGTCAAT
GGAAGCCATTTCCTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis