Browse Element(s) Details


Os.3738.1.S1_s_at

Description gb:AB037899.1
DB_XREF= gi:9188569
GEN=OspolD1
TID=Os.3738.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3738 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OspolD1 mRNA for OsPol delta large subunit, complete cds.
PROD=OsPol delta large subunit
FL= gb:AB037899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0833011/11DNA polymerase delta catalytic subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08290NANA11+4369554..4369871hypothetical protein
LOC_Os11g08300Os.5577.1.S1_at11/1111+4371234..4375946aldehyde dehydrogenase family protein, expressed
LOC_Os11g08314Os.56172.1.S1_at10/1111+4376687..4383287dehydration-responsive protein, putative, expressed
LOC_Os11g08314OsAffx.19544.1.S1_x_at1/1111+4376687..4383287dehydration-responsive protein, putative, expressed
LOC_Os11g08330Os.3738.1.S1_s_at11/1111+4383363..4393710DNA polymerase delta catalytic subunit, putative, expressed
LOC_Os11g08340OsAffx.30879.1.S1_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08340OsAffx.30879.1.S1_x_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08350NANA11+4404481..4405032hypothetical protein
LOC_Os11g08360OsAffx.30880.2.S1_at11/1111+4405504..4405935hypothetical protein
LOC_Os11g08370Os.8025.1.S1_at11/1111+4409142..4411752Major Facilitator Superfamily protein, expressed
LOC_Os11g08380Os.54511.1.S1_at11/1111+4411814..44143371-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os11g08390OsAffx.23250.2.S1_x_at5/1111+4417725..4419270retrotransposon protein, putative, LINE subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0009411biological_processresponse to UV
GO:0016035cellular_componentzeta DNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0003894molecular_functionzeta DNA polymerase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3738.1.S1_s_at--435--10551Chr11:4383931..4383955 (25 bp)
TTCATCAGGACGTTCTCTGCACAAG
LOC_Os11g08330
Os.3738.1.S1_s_at--986--9011Chr11:4383808..4383938 (25 bp)
TGCACAAGCCGGGATTGTCCTATTT
LOC_Os11g08330
Os.3738.1.S1_s_at--1035--8691Chr11:4383793..4383817 (25 bp)
TGTCCTATTTTCTACCGCCGAAGAA
LOC_Os11g08330
Os.3738.1.S1_s_at--245--2151Chr11:4383737..4383761 (25 bp)
ACAGCTTCAACGTTGGGACTTCTGA
LOC_Os11g08330
Os.3738.1.S1_s_at--383--6111Chr11:4383714..4383738 (25 bp)
GAGTCCTCTCATACTGACGGAGTAC
LOC_Os11g08330
Os.3738.1.S1_s_at--237--8951Chr11:4383700..4383724 (25 bp)
TGACGGAGTACTACTTTCCCCAAAT
LOC_Os11g08330
Os.3738.1.S1_s_at--571--2371Chr11:4383669..4383693 (25 bp)
AAACCATTACTGTGAGGCACGCCAT
LOC_Os11g08330
Os.3738.1.S1_s_at--350--651Chr11:4383619..4383643 (25 bp)
ATGCATGATGGCTCTGGCTTGTTTA
LOC_Os11g08330
Os.3738.1.S1_s_at--970--3091Chr11:4383580..4383604 (25 bp)
AATAGCTTTGTTCTACGGTCAGTTT
LOC_Os11g08330
Os.3738.1.S1_s_at--314--7031Chr11:4383507..4383531 (25 bp)
GTAATCTAGTTGCTTCCCTTGGTGC
LOC_Os11g08330
Os.3738.1.S1_s_at--355--6211Chr11:4383413..4383437 (25 bp)
GAGGCTGAGAAGCACCCATTCAAGA
LOC_Os11g08330
Target Sequence 
TTCATCAGGACGTTCTCTGCACAAGCCGGGATTGTCCTATTTTCTACCGCCGAAGAAAGGCGCAGAAGGATATGGCTGAA
GCTAGAGTACAGCTTCAACGTTGGGACTTCTGAGTCCTCTCATACTGACGGAGTACTACTTTCCCCAAATATTGCGAAAC
CATTACTGTGAGGCACGCCATTGCGGGATCATGTGATTGCATCTTCATGCATGATGGCTCTGGCTTGTTTAGTTGGATCG
GCTGAAATAGCTTTGTTCTACGGTCAGTTTGTTGTATTTTTAGGTGGTAGGTTANCTGTACCTCTAGCCGCTAACAGGGT
AATCTAGTTGCTTCCCTTGGTGCATTGATGCAGCCATGTGTAAGGTAGATAAACAATTTTTTTTCATCATCNNNTTTTAA
CTTCATGAGGTGATTGAGGCTGAGAAGCACCCATTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3738.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis