Browse Element(s) Details


OsAffx.30879.1.S1_x_at

Description tigr:9639.m00783
TID=OsAffx.30879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF071527 GH3-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0834011/11GH3 auxin-responsive promoter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08300Os.5577.1.S1_at11/1111+4371234..4375946aldehyde dehydrogenase family protein, expressed
LOC_Os11g08314Os.56172.1.S1_at10/1111+4376687..4383287dehydration-responsive protein, putative, expressed
LOC_Os11g08314OsAffx.19544.1.S1_x_at1/1111+4376687..4383287dehydration-responsive protein, putative, expressed
LOC_Os11g08330Os.3738.1.S1_s_at11/1111+4383363..4393710DNA polymerase delta catalytic subunit, putative, expressed
LOC_Os11g08340OsAffx.30879.1.S1_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08340OsAffx.30879.1.S1_x_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08350NANA11+4404481..4405032hypothetical protein
LOC_Os11g08360OsAffx.30880.2.S1_at11/1111+4405504..4405935hypothetical protein
LOC_Os11g08370Os.8025.1.S1_at11/1111+4409142..4411752Major Facilitator Superfamily protein, expressed
LOC_Os11g08380Os.54511.1.S1_at11/1111+4411814..44143371-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os11g08390OsAffx.23250.2.S1_x_at5/1111+4417725..4419270retrotransposon protein, putative, LINE subclass
LOC_Os11g08400OsAffx.30881.1.S1_at11/1111+4423984..4427141expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010252biological_processauxin homeostasis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30879.1.S1_x_at--1055--7771Chr11:4398827..4398851 (25 bp)
GGTCGTCATGACCACGTTCACCGGC
LOC_Os11g08340
OsAffx.30879.1.S1_x_at--699--2891Chr11:4398882..4398906 (25 bp)
AAGGTGGCCGGATTCCACCACGCGA
LOC_Os11g08340
OsAffx.30879.1.S1_x_at--1160--2691Chr11:4398912..4398936 (25 bp)
AAGCTCAGGTTCGTGTGCCGGCGAA
LOC_Os11g08340
OsAffx.30879.1.S1_x_at--162--9611Chr11:4398940..4398964 (25 bp)
TCATCCTGTCCATCAACGTCGACAA
LOC_Os11g08340
OsAffx.30879.1.S1_x_at--451--5971Chr11:4399029..4399053 (25 bp)
GAGAACCACAAGCAGCTCGAGATCG
LOC_Os11g08340
OsAffx.30879.1.S1_x_at--840--1511Chr11:4399039..4399063 (25 bp)
AGCAGCTCGAGATCGCCGACTACAC
LOC_Os11g08340
OsAffx.30879.1.S1_x_at--310--2031Chr11:4399096..4399120 (25 bp)
ACTACGTCGTCTTCTGGGAGCTGAA
LOC_Os11g08340
OsAffx.30879.1.S1_x_at--244--6991Chr11:4399202..4399226 (25 bp)
GTACGCCCAGTCGAGGAAGACGTGC
LOC_Os11g08340
OsAffx.30879.1.S1_x_at--236--8251Chr11:4399315..4399339 (25 bp)
GGCAGTTCAAGATGCCCCGGTGCGT
LOC_Os11g08340
OsAffx.30879.1.S1_x_at--388--8371Chr11:4399356..4399380 (25 bp)
GGCGTGCTCCGGGTCCTTAAGGACA
LOC_Os11g08340
OsAffx.30879.1.S1_x_at--367--7791Chr11:4399367..4399391 (25 bp)
GGTCCTTAAGGACAACACCATCAAC
LOC_Os11g08340
Target Sequence 
GGTCGTCATGACCACGTTCACCGGCCTGTACCGCTACCGGCTGGGCGACGTGGTGAAGGTGGCCGGATTCCACCACGCGA
CGCCCAAGCTCAGGTTCGTGTGCCGGCGAAGCCTCATCCTGTCCATCAACGTCGACAAGAACAGCGAGCACGACCTCCAG
CTCGCCGTCGACAGCGCCGCCAAGATCCTCGCCGGCGACGGCGAGAACCACAAGCAGCTCGAGATCGCCGACTACACCAG
CCACGCCGACACGTCGTCGGACCCGGGCCACTACGTCGTCTTCTGGGAGCTGAACGGTGGCGGTGAGGAGGACGGCGGCG
GCGTGCTGCAGCGGTGCTGCGACGAGATGGACCGGGCGTTCGGCGCCGACGCGGGGTACGCCCAGTCGAGGAAGACGTGC
GCCATCGGGGCGCTCGAGCTGCGGGTGCTGCGGCGCGGGGCGTTCCAGGAGGTGCTCCGCCACTACGTCGCCGGCGGCAG
CTCGGCGGGGCAGTTCAAGATGCCCCGGTGCGTCGCGCCGTCCAACGCCGGCGTGCTCCGGGTCCTTAAGGACAACACCA
TCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30879.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis