Browse Element(s) Details


Os.54511.1.S1_at

Description gb:AK105491.1
DB_XREF= gi:32990700
TID=Os.54511.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-C01, full insert sequence.
FL= gb:AK105491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0838011/111-aminocyclopropane-1-carboxylate oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08330Os.3738.1.S1_s_at11/1111+4383363..4393710DNA polymerase delta catalytic subunit, putative, expressed
LOC_Os11g08340OsAffx.30879.1.S1_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08340OsAffx.30879.1.S1_x_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08350NANA11+4404481..4405032hypothetical protein
LOC_Os11g08360OsAffx.30880.2.S1_at11/1111+4405504..4405935hypothetical protein
LOC_Os11g08370Os.8025.1.S1_at11/1111+4409142..4411752Major Facilitator Superfamily protein, expressed
LOC_Os11g08380Os.54511.1.S1_at11/1111+4411814..44143371-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os11g08390OsAffx.23250.2.S1_x_at5/1111+4417725..4419270retrotransposon protein, putative, LINE subclass
LOC_Os11g08400OsAffx.30881.1.S1_at11/1111+4423984..4427141expressed protein
LOC_Os11g08410OsAffx.7045.1.S1_at11/1111+4428678..4429973GATA zinc finger family protein
LOC_Os11g08420OsAffx.30880.1.S1_at10/1111+4433956..4436013hypothetical protein
LOC_Os11g08430NANA11+4436703..4437254hypothetical protein
LOC_Os11g08440Os.32737.1.S1_at10/1111+4439069..4442152Heat shock 70 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009693biological_processethylene biosynthesis
GO:0009727biological_processdetection of ethylene stimulus
GO:0009815molecular_function1-aminocyclopropane-1-carboxylate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54511.1.S1_at--423--2031Chr11:4412327..4412351 (25 bp)
ACTACCCGAGCTTCAAGTTCGGCGA
LOC_Os11g08380
Os.54511.1.S1_at--287--1011Chr11:4412256..4412280 (25 bp)
AGGTTCGCAGCCCTGGCGAACAAGT
LOC_Os11g08380
Os.54511.1.S1_at--434--8991Chr11:4412191..4412215 (25 bp)
TGAAGTCTGAACCTGCTGCAAAGCT
LOC_Os11g08380
Os.54511.1.S1_at--399--4811Chr11:4412169..4412193 (25 bp)
GCTCTCTCAGCCTTAAGCTACATAT
LOC_Os11g08380
Os.54511.1.S1_at--928--7911Chr11:4412096..4412120 (25 bp)
GGTTGTCTAAGTATGTGCTTTGCAA
LOC_Os11g08380
Os.54511.1.S1_at--278--6751Chr11:4412062..4412086 (25 bp)
GTTAATTACTAGTGTCTTTGCAGCT
LOC_Os11g08380
Os.54511.1.S1_at--53--7151Chr11:4412049..4412073 (25 bp)
GTCTTTGCAGCTATCACAACCATGT
LOC_Os11g08380
Os.54511.1.S1_at--1003--9771Chr11:4411997..4412021 (25 bp)
TAAGGTTGTCTTGTGCTGTGGTCAA
LOC_Os11g08380
Os.54511.1.S1_at--853--7491Chr11:4411980..4412004 (25 bp)
GTGGTCAACAGATGCCAGAGTAGTT
LOC_Os11g08380
Os.54511.1.S1_at--744--6951Chr11:4411954..4411978 (25 bp)
GTAGCTAGAATTAATGGCATCCGTG
LOC_Os11g08380
Os.54511.1.S1_at--56--5291Chr11:4411899..4411923 (25 bp)
GAATGTCAGTGTGTTTGCTCAGGTG
LOC_Os11g08380
Target Sequence 
ACTACCCGAGCTTCAAGTTCGGCGACTACATGGAGGTGTACGTGAAGCAGAAGTTCCAGGCCAAGGAGCCCAGGTTCGCA
GCCCTGGCGAACAAGTGATTCAAATTGATGGGATGAAATTGAGCTTTGCAGCAATCTGAAGTCTGAACCTGCTGCAAAGC
TCTCTCAGCCTTAAGCTACATATACAGTTCGAATAAGCGTGTGATTACAATACGGATTTGTAAGATGGATAGGTTGTCTA
AGTATGTGCTTTGCAATACATATGTGTTAATTACTAGTGTCTTTGCAGCTATCACAACCATGTAATCATTCCAATTTGTA
TGGTGGCATGTAAGGTTGTCTTGTGCTGTGGTCAACAGATGCCAGAGTAGTTTGTAGCTAGAATTAATGGCATCCGTGGG
GTTTTTTAAATTTTATTCGTTTCTGTTTGAATGTCAGTGTGTTTGCTCAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis