Browse Element(s) Details


OsAffx.30880.1.S1_at

Description tigr:9639.m00791
TID=OsAffx.30880.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0842010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08370Os.8025.1.S1_at11/1111+4409142..4411752Major Facilitator Superfamily protein, expressed
LOC_Os11g08380Os.54511.1.S1_at11/1111+4411814..44143371-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os11g08390OsAffx.23250.2.S1_x_at5/1111+4417725..4419270retrotransposon protein, putative, LINE subclass
LOC_Os11g08400OsAffx.30881.1.S1_at11/1111+4423984..4427141expressed protein
LOC_Os11g08410OsAffx.7045.1.S1_at11/1111+4428678..4429973GATA zinc finger family protein
LOC_Os11g08420OsAffx.30880.1.S1_at10/1111+4433956..4436013hypothetical protein
LOC_Os11g08430NANA11+4436703..4437254hypothetical protein
LOC_Os11g08440Os.32737.1.S1_at10/1111+4439069..4442152Heat shock 70 kDa protein, putative, expressed
LOC_Os11g08450OsAffx.19542.3.S1_x_at5/1111+4456507..4458300retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30880.1.S1_at--755--5571Chr11:4435736..4435760 (25 bp)
GAAATGCGGGCTTGTCCACCGTGCG
LOC_Os11g08420
OsAffx.30880.1.S1_at--1156--10811NONE
TTGTGCAGCATGTGGTGTCCGAGAA
NONE
OsAffx.30880.1.S1_at--799--7731Chr11:4434137..4434161 (25 bp)
GGTGTCCGAGAATACAACAAGGTTA
LOC_Os11g08420
OsAffx.30880.1.S1_at--909--6791Chr11:4434116..4434140 (25 bp)
GTTATAATTGGTGCAGAGACCTCAC
LOC_Os11g08420
OsAffx.30880.1.S1_at--635--5991Chr11:4434101..4434125 (25 bp)
GAGACCTCACAAAGAGTTGGCAACA
LOC_Os11g08420
OsAffx.30880.1.S1_at--724--8171Chr11:4434083..4434107 (25 bp)
GGCAACAAACAGATTATTCGATTCA
LOC_Os11g08420
OsAffx.30880.1.S1_at--169--111Chr11:4434068..4434092 (25 bp)
ATTCGATTCATTTTGCCTCTGACGG
LOC_Os11g08420
OsAffx.30880.1.S1_at--609--7611Chr11:4434044..4434068 (25 bp)
GGGAATATTCTAAGCTGAACACCAA
LOC_Os11g08420
OsAffx.30880.1.S1_at--183--1611Chr11:4434032..4434056 (25 bp)
AGCTGAACACCAAGTGCTGCTGTCA
LOC_Os11g08420
OsAffx.30880.1.S1_at--11--2251Chr11:4434007..4434031 (25 bp)
AAACTTGCGACTGGAAGAGGACCCT
LOC_Os11g08420
OsAffx.30880.1.S1_at--1066--5331Chr11:4433994..4434018 (25 bp)
GAAGAGGACCCTGACTTACTTCTCT
LOC_Os11g08420
Target Sequence 
GAAATGCGGGCTTGTCCACCGTGCGGCGGCGGCGGCGGCAGCGGACGACGGCGCGGAGCGCCGACGATGAAGATGGGTTG
TGCAGCATGTGGTGTCCGAGAATACAACAAGGTTATAATTGGTGCAGAGACCTCACAAAGAGTTGGCAACAAACAGATTA
TTCGATTCATTTTGCCTCTGACGGGGAATATTCTAAGCTGAACACCAAGTGCTGCTGTCAAAACTTGCGACTGGAAGAGG
ACCCTGACTTACTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis