Browse Element(s) Details


Os.32737.1.S1_at

Description gb:AK063977.1
DB_XREF= gi:32973995
TID=Os.32737.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C07, full insert sequence.
FL= gb:AK063977.1 gb:AK103083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0844010/11Heat shock 70 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08380Os.54511.1.S1_at11/1111+4411814..44143371-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os11g08390OsAffx.23250.2.S1_x_at5/1111+4417725..4419270retrotransposon protein, putative, LINE subclass
LOC_Os11g08400OsAffx.30881.1.S1_at11/1111+4423984..4427141expressed protein
LOC_Os11g08410OsAffx.7045.1.S1_at11/1111+4428678..4429973GATA zinc finger family protein
LOC_Os11g08420OsAffx.30880.1.S1_at10/1111+4433956..4436013hypothetical protein
LOC_Os11g08430NANA11+4436703..4437254hypothetical protein
LOC_Os11g08440Os.32737.1.S1_at10/1111+4439069..4442152Heat shock 70 kDa protein, putative, expressed
LOC_Os11g08450OsAffx.19542.3.S1_x_at5/1111+4456507..4458300retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g08460Os.54622.1.S1_at10/1111+4462363..4464216Heat shock cognate 70 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32737.1.S1_at--722--1271NONE
AGATCATCTCTAGCGATAACTTCTG
NONE
Os.32737.1.S1_at--607--6451Chr11:4441906..4441930 (25 bp)
GATAACTTCTGGGAACCTGGTGATC
LOC_Os11g08440
Os.32737.1.S1_at--94--10511Chr11:4441932..4441956 (25 bp)
TTCAATGATGTTCTGCTTCTGCACC
LOC_Os11g08440
Os.32737.1.S1_at--1062--7991Chr11:4441965..4441989 (25 bp)
GGATGTCTTACATCTGCCCATCGAA
LOC_Os11g08440
Os.32737.1.S1_at--667--9491Chr11:4441977..4442001 (25 bp)
TCTGCCCATCGAACTGATTTCAATG
LOC_Os11g08440
Os.32737.1.S1_at--764--10251Chr11:4442031..4442055 (25 bp)
TTTGCTAAAACTAATCTAGGTCTAG
LOC_Os11g08440
Os.32737.1.S1_at--186--3711Chr11:4442046..4442070 (25 bp)
CTAGGTCTAGTGACTACTTATCTAA
LOC_Os11g08440
Os.32737.1.S1_at--51--2051Chr11:4442061..4442085 (25 bp)
ACTTATCTAAATGAGCTAATGCGGA
LOC_Os11g08440
Os.32737.1.S1_at--875--1971Chr11:4442098..4442122 (25 bp)
ACTGACGTGTGTTTGATGGAGCCAT
LOC_Os11g08440
Os.32737.1.S1_at--363--831Chr11:4442113..4442137 (25 bp)
ATGGAGCCATAATTAATCTTAAGTC
LOC_Os11g08440
Os.32737.1.S1_at--741--131Chr11:4442124..4442148 (25 bp)
ATTAATCTTAAGTCGCATTTGGCGT
LOC_Os11g08440
Target Sequence 
AGATCATCTCTAGCGATAACTTCTGGGAACCTGGTGATCTTTCAATGATGTTCTGCTTCTGCACCNNCNTGNTGGATGTC
TTACATCTGCCCATCGAACTGATTTCAATGANGNGGAAAAGTTTGTGCTACTAAATTTTTTTGCTAAAACTAATCTAGGT
CTAGTGACTACTTATCTAAATGAGCTAATGCGGAAGATGATGNCATACTGACGTGTGTTTGATGGAGCCATAATTAATCT
TAAGTCGCATTTGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis