Browse Element(s) Details


OsAffx.30881.1.S1_at

Description tigr:9639.m00789
TID=OsAffx.30881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WD-40 repeat protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0840011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08340OsAffx.30879.1.S1_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08340OsAffx.30879.1.S1_x_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08350NANA11+4404481..4405032hypothetical protein
LOC_Os11g08360OsAffx.30880.2.S1_at11/1111+4405504..4405935hypothetical protein
LOC_Os11g08370Os.8025.1.S1_at11/1111+4409142..4411752Major Facilitator Superfamily protein, expressed
LOC_Os11g08380Os.54511.1.S1_at11/1111+4411814..44143371-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os11g08390OsAffx.23250.2.S1_x_at5/1111+4417725..4419270retrotransposon protein, putative, LINE subclass
LOC_Os11g08400OsAffx.30881.1.S1_at11/1111+4423984..4427141expressed protein
LOC_Os11g08410OsAffx.7045.1.S1_at11/1111+4428678..4429973GATA zinc finger family protein
LOC_Os11g08420OsAffx.30880.1.S1_at10/1111+4433956..4436013hypothetical protein
LOC_Os11g08430NANA11+4436703..4437254hypothetical protein
LOC_Os11g08440Os.32737.1.S1_at10/1111+4439069..4442152Heat shock 70 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30881.1.S1_at--222--8791Chr11:4424692..4424716 (25 bp)
TGTTCAACGGCATCACCGTGCTGCA
LOC_Os11g08400
OsAffx.30881.1.S1_at--1021--1931Chr11:4424686..4424710 (25 bp)
ACGGCATCACCGTGCTGCAGAAGTT
LOC_Os11g08400
OsAffx.30881.1.S1_at--729--9011Chr11:4424537..4424695 (25 bp)
TGCAGAAGTTCAAAGGGTTCAAGAA
LOC_Os11g08400
OsAffx.30881.1.S1_at--850--1271Chr11:4424501..4424525 (25 bp)
AGATCTCGGCGTCGTACTCCGGCGA
LOC_Os11g08400
OsAffx.30881.1.S1_at--791--9931Chr11:4424469..4424493 (25 bp)
TACGTCGTGTGCTCCAGCGAGGACT
LOC_Os11g08400
OsAffx.30881.1.S1_at--8--1651Chr11:4424454..4424478 (25 bp)
AGCGAGGACTCCAACGTCTACGTGT
LOC_Os11g08400
OsAffx.30881.1.S1_at--205--5711Chr11:4424448..4424472 (25 bp)
GACTCCAACGTCTACGTGTGGCGGC
LOC_Os11g08400
OsAffx.30881.1.S1_at--1027--4551Chr11:4424354..4424378 (25 bp)
GCGCCTACGAGTGCTTCTTCTGCAA
LOC_Os11g08400
OsAffx.30881.1.S1_at--669--1651Chr11:4424182..4424206 (25 bp)
AGCGCGACAACTGGGCAGCTTGCCT
LOC_Os11g08400
OsAffx.30881.1.S1_at--232--11Chr11:4424148..4424172 (25 bp)
AAGTCCGGGCCGATGACCTACTCCG
LOC_Os11g08400
OsAffx.30881.1.S1_at--429--6391Chr11:4424014..4424038 (25 bp)
GATCAGGGTGTACCAAAACTTCGGC
LOC_Os11g08400
Target Sequence 
TGTTCAACGGCATCACCGTGCTGCAGAAGTTCAAAGGGTTCAAGAACACCAGCAGCCAGATCTCGGCGTCGTACTCCGGC
GACGGCCGCTACGTCGTGTGCTCCAGCGAGGACTCCAACGTCTACGTGTGGCGGCGCGCCACGTCGCCGGGCGGCGCCGC
GGGGGGCGGCGTCGCCGTCAAGGCCAAGACGTGGCGCACCAGCCGCGCCTACGAGTGCTTCTTCTGCAAGGACGTGTCGG
CCGCCGTGCCGTGGCCGCTGTCACCGTGCCTACCACCGACGCGCGGCGGCGGCGGCGGCGGCGACGACGACGAGCGCGCC
TCGTCGAGCGTGCGCGGCGCCGTCGTCGGTGGGGACGCGTCGGCGTCGCGGAGCCCAGCGCGACAACTGGGCAGCTTGCC
TCTCCGGCCCAAGTCCGGGCCGATGACCTACTCCGGCGAGAAGCAGCTGGGCGTGCCCAGGGAGCCGTCGTCGCGGTGGC
ACGGCGGCGCGGAGGGCGGCAACGCGTGGGGGATGGTGGTGGTGACGGCGAGCCTCGCCGGCGAGATCAGGGTGTACCAA
AACTTCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis