Browse Element(s) Details


OsAffx.30880.2.S1_at

Description tigr:9639.m00785
TID=OsAffx.30880.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0836011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08314Os.56172.1.S1_at10/1111+4376687..4383287dehydration-responsive protein, putative, expressed
LOC_Os11g08314OsAffx.19544.1.S1_x_at1/1111+4376687..4383287dehydration-responsive protein, putative, expressed
LOC_Os11g08330Os.3738.1.S1_s_at11/1111+4383363..4393710DNA polymerase delta catalytic subunit, putative, expressed
LOC_Os11g08340OsAffx.30879.1.S1_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08340OsAffx.30879.1.S1_x_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08350NANA11+4404481..4405032hypothetical protein
LOC_Os11g08360OsAffx.30880.2.S1_at11/1111+4405504..4405935hypothetical protein
LOC_Os11g08370Os.8025.1.S1_at11/1111+4409142..4411752Major Facilitator Superfamily protein, expressed
LOC_Os11g08380Os.54511.1.S1_at11/1111+4411814..44143371-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os11g08390OsAffx.23250.2.S1_x_at5/1111+4417725..4419270retrotransposon protein, putative, LINE subclass
LOC_Os11g08400OsAffx.30881.1.S1_at11/1111+4423984..4427141expressed protein
LOC_Os11g08410OsAffx.7045.1.S1_at11/1111+4428678..4429973GATA zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30880.2.S1_at--645--7211Chr11:4405633..4405657 (25 bp)
GTCGATCGCTTGCGCCAGCTGGTCA
LOC_Os11g08360
OsAffx.30880.2.S1_at--1115--5571Chr11:4405745..4405769 (25 bp)
GAAATGCGAGCTTGTACACCGTGCA
LOC_Os11g08360
OsAffx.30880.2.S1_at--184--611Chr11:4405748..4405772 (25 bp)
ATGCGAGCTTGTACACCGTGCAGCG
LOC_Os11g08360
OsAffx.30880.2.S1_at--682--4931Chr11:4405754..4405778 (25 bp)
GCTTGTACACCGTGCAGCGGCGGCA
LOC_Os11g08360
OsAffx.30880.2.S1_at--855--3411Chr11:4405795..4405819 (25 bp)
CAGACCGCCTACGACGACGAAGCTG
LOC_Os11g08360
OsAffx.30880.2.S1_at--647--1851Chr11:4405811..4405835 (25 bp)
ACGAAGCTGGGTTGTGCTGCAGCGT
LOC_Os11g08360
OsAffx.30880.2.S1_at--745--8691Chr11:4405823..4405847 (25 bp)
TGTGCTGCAGCGTGCTGTGCGCATT
LOC_Os11g08360
OsAffx.30880.2.S1_at--260--8851Chr11:4405850..4405874 (25 bp)
TGATCTTCCTCTCCATTGCGATTAT
LOC_Os11g08360
OsAffx.30880.2.S1_at--597--10671Chr11:4405855..4405879 (25 bp)
TTCCTCTCCATTGCGATTATGGTGC
LOC_Os11g08360
OsAffx.30880.2.S1_at--750--151Chr11:4405870..4405894 (25 bp)
ATTATGGTGCTGATCTTCATCGGCG
LOC_Os11g08360
OsAffx.30880.2.S1_at--148--7311Chr11:4405876..4405900 (25 bp)
GTGCTGATCTTCATCGGCGTGATCG
LOC_Os11g08360
Target Sequence 
GTCGATCGCTTGCGCCAGCTGGTCACGCCATCGGCGCCGCCTCTCCCTCCTGAGACGATGAACCCACCGCCAAGACGTCA
GCTCACCGGCGAGTTCGTCGACGTCGAGCTGGGAAATGCGAGCTTGTACACCGTGCAGCGGCGGCAGCCGCAGACGACAG
CGCAGACCGCCTACGACGACGAAGCTGGGTTGTGCTGCAGCGTGCTGTGCGCATTGGTGATCTTCCTCTCCATTGCGATT
ATGGTGCTGATCTTCATCGGCGTGATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30880.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis