Browse Element(s) Details


Os.56172.1.S1_at

Description gb:AK109545.1
DB_XREF= gi:32994754
TID=Os.56172.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E05, full insert sequence.
FL= gb:AK109545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0831410/11dehydration-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08290NANA11+4369554..4369871hypothetical protein
LOC_Os11g08300Os.5577.1.S1_at11/1111+4371234..4375946aldehyde dehydrogenase family protein, expressed
LOC_Os11g08314Os.56172.1.S1_at10/1111+4376687..4383287dehydration-responsive protein, putative, expressed
LOC_Os11g08314OsAffx.19544.1.S1_x_at1/1111+4376687..4383287dehydration-responsive protein, putative, expressed
LOC_Os11g08330Os.3738.1.S1_s_at11/1111+4383363..4393710DNA polymerase delta catalytic subunit, putative, expressed
LOC_Os11g08340OsAffx.30879.1.S1_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08340OsAffx.30879.1.S1_x_at11/1111+4397394..4399424GH3 auxin-responsive promoter family protein
LOC_Os11g08350NANA11+4404481..4405032hypothetical protein
LOC_Os11g08360OsAffx.30880.2.S1_at11/1111+4405504..4405935hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56172.1.S1_at--959--5451Chr11:4382025..4382049 (25 bp)
GAACGTGGTGACGATCAACTCGCCG
LOC_Os11g08314
Os.56172.1.S1_at--751--2171Chr11:4382051..4382075 (25 bp)
ACACGCTGCCGGTGATCTACGAGAG
LOC_Os11g08314
Os.56172.1.S1_at--171--9711NONE
TCAAATCCAGGTGCGAGGTGTTGCC
NONE
Os.56172.1.S1_at--108--3931Chr11:4382910..4382934 (25 bp)
CGGCCGAACGGGAAGCTCATCGTGA
LOC_Os11g08314
Os.56172.1.S1_at--510--7111Chr11:4382994..4383018 (25 bp)
GTCAGGATGACCGTCTCCAAGAACA
LOC_Os11g08314
Os.56172.1.S1_at--727--2491Chr11:4383015..4383039 (25 bp)
AACAGGGAAGCGATGCTCTGCGCGA
LOC_Os11g08314
Os.56172.1.S1_at--913--4471Chr11:4383095..4383119 (25 bp)
GCCGGCGATCCATGTAGTAGAGTCT
LOC_Os11g08314
Os.56172.1.S1_at--572--1171Chr11:4383110..4383134 (25 bp)
AGTAGAGTCTTTTGGTCGGTTGATC
LOC_Os11g08314
Os.56172.1.S1_at--861--6371Chr11:4383131..4383155 (25 bp)
GATCCGGTGGTAGCTGCAATACTTA
LOC_Os11g08314
Os.56172.1.S1_at--894--1491Chr11:4383155..4383179 (25 bp)
AGCACGTACAGGGTGATCTACACTA
LOC_Os11g08314
Os.56172.1.S1_at--1020--6411Chr11:4383169..4383193 (25 bp)
GATCTACACTACACTGGGTGCTGCA
LOC_Os11g08314
Target Sequence 
GAACGTGGTGACGATCAACTCGCCGGACACGCTGCCGGTGATCTACGAGAGGGGGCTGTTCGGCATCTACCATGACTGGT
GTGAGTCATTCAGCACCTACCCGAGATCCTACGACCTCCTCCATGCCGACCATCTCTTCTCCAAGCTCAAATCCAGGTGC
GAGGTGTTGCCGGTGATCGTGGAGGTGGACCGGATCCTCCGGCCGAACGGGAAGCTCATCGTGAGGGACGACAAGGAGAC
GGTGGACGAGATCAAGGGGGTGGTGAGGTCGCTGCAATGGGAGGTCAGGATGACCGTCTCCAAGAACAGGGAAGCGATGC
TCTGCGCGAGGAAGACGACGTGGCGGCCCACGGAAGCCGAGGCAAGATGACCTCGCCGTCACCGGCCGGCGATCCATGTA
GTAGAGTCTTTTGGTCGGTTGATCCGGTGGTAGCTGCAATACTTAGCACGTACAGGGTGATCTACACTACACTGGGTGCT
GCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis