Browse Element(s) Details


Os.54622.1.S1_at

Description gb:AK106272.1
DB_XREF= gi:32991481
TID=Os.54622.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G10, full insert sequence.
FL= gb:AK106272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0846010/11Heat shock cognate 70 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08440Os.32737.1.S1_at10/1111+4439069..4442152Heat shock 70 kDa protein, putative, expressed
LOC_Os11g08450OsAffx.19542.3.S1_x_at5/1111+4456507..4458300retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g08460Os.54622.1.S1_at10/1111+4462363..4464216Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g08470Os.55390.1.S1_x_at1/1111+4472523..4476556Heat shock cognate 70 kDa protein, putative
LOC_Os11g08470Os.27131.1.S1_at1/1111+4472523..4476556Heat shock cognate 70 kDa protein, putative
LOC_Os11g08470OsAffx.1705.1.S1_at1/1111+4472523..4476556Heat shock cognate 70 kDa protein, putative
LOC_Os11g08480OsAffx.30884.1.S1_x_at11/1111+4477351..4478577hypothetical protein
LOC_Os11g08490OsAffx.30885.1.S1_at11/1111+4481822..4482850hypothetical protein
LOC_Os11g08500OsAffx.30886.1.S1_at9/1111+4485430..4487139hypothetical protein
LOC_Os11g08510NANA11+4487941..4490675retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54622.1.S1_at--578--2751NONE
AAGAAACACTGCAATCCCGACCAAG
NONE
Os.54622.1.S1_at--589--5531Chr11:4462894..4462918 (25 bp)
GAAAAACTTCACTACTCTCTACGAC
LOC_Os11g08460
Os.54622.1.S1_at--831--6451Chr11:4462864..4462888 (25 bp)
GATCAACGTGAGCTTTCCGGTGTAC
LOC_Os11g08460
Os.54622.1.S1_at--14--4631Chr11:4462799..4462823 (25 bp)
GCGAGTTCACGCTATATGGCATCCC
LOC_Os11g08460
Os.54622.1.S1_at--660--6111Chr11:4462760..4462784 (25 bp)
GAGTGCCATCTATCGATGTCACTTT
LOC_Os11g08460
Os.54622.1.S1_at--1145--9551Chr11:4462715..4462739 (25 bp)
TCTTGAACGTTTCTGCCGAGCACAA
LOC_Os11g08460
Os.54622.1.S1_at--291--8971Chr11:4462544..4462568 (25 bp)
TGAAAGTGATTCTGCGACCTACCAT
LOC_Os11g08460
Os.54622.1.S1_at--1025--8271Chr11:4462501..4462525 (25 bp)
GGCATCCTAATGCAATGGGCTAGCT
LOC_Os11g08460
Os.54622.1.S1_at--522--7711Chr11:4462456..4462480 (25 bp)
GGGTGCTTAACGCTAGTATTGTCAT
LOC_Os11g08460
Os.54622.1.S1_at--469--5152Chr11:4448726..4448745 (20 bp)
GCAACTTCTGGCTTGGCACATGTAT
NONE
Os.54622.1.S1_at--679--871Chr11:4462408..4462432 (25 bp)
ATGGCCAAATCCTAGCTTAAGCTTT
LOC_Os11g08460
Target Sequence 
AAGAAACACTGCAATCCCGACCAAGAAGGTGAAAAACTTCACTACTCTCTACGACAACCAGATCAACGTGAGCTTTCCGG
TGTACGAGGGTGAGAGCGCAAACACCAAGGACAACAACCTGCTCGGCGAGTTCACGCTATATGGCATCCCCCCGGCACCC
AAGAGAGTGCCATCTATCGATGTCACTTTCGACATTGATGCCAACGGGGTCTTGAACGTTTCTGCCGAGCACAAGGTCAC
CGGACAGAAGAACAGCATCACCATCACTAACCGCAGCGGACGGCTGAACAAGGAGGAAATCGATCGCATGGCTCTGGAGG
CCGAGAGGCACAGGATGAAGCGGATCAAGCAAAACGAAGTAGTCTAAATGAACTGAACATTGAAAGTGATTCTGCGACCT
ACCATGATCAAAGAAGTATCATCGGCATCCTAATGCAATGGGCTAGCTGCTACAGGGGTTTGATTATTGGGTGCTTAACG
CTAGTATTGTCATGCAACTTCTGGCTTGGCACATGTATGGCCAAATCCTAGCTTAAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis