Browse Element(s) Details


OsAffx.30885.1.S1_at

Description tigr:9639.m00798
TID=OsAffx.30885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0849011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08450OsAffx.19542.3.S1_x_at5/1111+4456507..4458300retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g08460Os.54622.1.S1_at10/1111+4462363..4464216Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g08470Os.55390.1.S1_x_at1/1111+4472523..4476556Heat shock cognate 70 kDa protein, putative
LOC_Os11g08470Os.27131.1.S1_at1/1111+4472523..4476556Heat shock cognate 70 kDa protein, putative
LOC_Os11g08470OsAffx.1705.1.S1_at1/1111+4472523..4476556Heat shock cognate 70 kDa protein, putative
LOC_Os11g08480OsAffx.30884.1.S1_x_at11/1111+4477351..4478577hypothetical protein
LOC_Os11g08490OsAffx.30885.1.S1_at11/1111+4481822..4482850hypothetical protein
LOC_Os11g08500OsAffx.30886.1.S1_at9/1111+4485430..4487139hypothetical protein
LOC_Os11g08510NANA11+4487941..4490675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g08520OsAffx.18748.1.S1_x_at11/1111+4491938..4492258hypothetical protein
LOC_Os11g08520OsAffx.18748.1.S1_at11/1111+4491938..4492258hypothetical protein
LOC_Os11g08530Os.9021.4.S1_at9/1111+4501064..4503989expressed protein
LOC_Os11g08536OsAffx.7046.1.S1_at11/1111+4505263..4506128hypothetical protein
LOC_Os11g08542NANA11+4506684..4509654retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30885.1.S1_at--1018--9192Chr11:4482031..4482055 (25 bp)
TCCAACGCCTACCAAGTGTTCGACG
LOC_Os11g08490
OsAffx.30885.1.S1_at--365--271Chr11:4482056..4482080 (25 bp)
ATATGTTCTAGCTCTGACGCCAAGG
LOC_Os11g08490
OsAffx.30885.1.S1_at--971--5791Chr11:4482071..4482095 (25 bp)
GACGCCAAGGCCGATATCACTGTGG
LOC_Os11g08490
OsAffx.30885.1.S1_at--328--9851Chr11:4482097..4482121 (25 bp)
TACAATGGTTACTTGCGTCACCTCT
LOC_Os11g08490
OsAffx.30885.1.S1_at--146--7111Chr11:4482113..4482137 (25 bp)
GTCACCTCTGTCGAGTCATCAATGG
LOC_Os11g08490
OsAffx.30885.1.S1_at--61--8391Chr11:4482243..4482267 (25 bp)
GGCGCAGACTTTGCTAGGGTCACAT
LOC_Os11g08490
OsAffx.30885.1.S1_at--64--8971Chr11:4482388..4482412 (25 bp)
TGAAATGCCCTGAGTGCGACAGTAA
LOC_Os11g08490
OsAffx.30885.1.S1_at--684--7671Chr11:4482457..4482481 (25 bp)
GGGATTCACGACCAGCACATGGGTT
LOC_Os11g08490
OsAffx.30885.1.S1_at--667--871Chr11:4482524..4482720 (25 bp)
ATGGCCACCACCAATTGAATCCTGG
LOC_Os11g08490
OsAffx.30885.1.S1_at--152--5331Chr11:4482773..4482797 (25 bp)
GAAGTTAAGGTTCCATGGCTGTTAC
LOC_Os11g08490
OsAffx.30885.1.S1_at--868--8331Chr11:4482789..4482813 (25 bp)
GGCTGTTACTTGACCAGGCAAGGTT
LOC_Os11g08490
Target Sequence 
TCCAACGCCTACCAAGTGTTCGACGATATGTTCTAGCTCTGACGCCAAGGCCGATATCACTGTGGCTACAATGGTTACTT
GCGTCACCTCTGTCGAGTCATCAATGGAGTTGGTAGCTACTGACAGCACCACCAAAGGCACCCACATCAACACCCCTGAT
AGTACCAAGGGTGGCGCAGACTTTGCTAGGGTCACATGCCAGACCATGATGGGTGTGCCTGAAGGCGTTCTAGTACCTGA
TGCATCATCTGAAGTCTTCTCGCCATGGTTGATCGCTGAAATGGACCCTATGATGTTGATGGTCACTAAGTGTTCGATGA
AATGCCCTGAGTGCGACAGTAAGGGTTGGGCAACTGGGATTCACGACCAGCACATGGGTTGGAATTTAGTTATTGCTGGG
TCGAAGAGTTTAAGTTGCCACCATGGCCACCACCAATTGAATCCTGGGGGTCTTATTTTGCTAAACATAGTGAAATTGCA
AGAGGCTTGGAATTACATAGAAGTTAAGGTTCCATGGCTGTTACTTGACCAGGCAAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis