Browse Element(s) Details


OsAffx.7046.1.S1_at

Description tigr:9639.m00803
TID=OsAffx.7046.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0853611/11hypothetical protein
LOC_Os04g130007/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08490OsAffx.30885.1.S1_at11/1111+4481822..4482850hypothetical protein
LOC_Os11g08500OsAffx.30886.1.S1_at9/1111+4485430..4487139hypothetical protein
LOC_Os11g08510NANA11+4487941..4490675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g08520OsAffx.18748.1.S1_x_at11/1111+4491938..4492258hypothetical protein
LOC_Os11g08520OsAffx.18748.1.S1_at11/1111+4491938..4492258hypothetical protein
LOC_Os11g08530Os.9021.4.S1_at9/1111+4501064..4503989expressed protein
LOC_Os11g08536OsAffx.7046.1.S1_at11/1111+4505263..4506128hypothetical protein
LOC_Os11g08542NANA11+4506684..4509654retrotransposon protein, putative, unclassified
LOC_Os11g08550OsAffx.11259.1.S1_at1/1111+4510000..4515641retrotransposon protein, putative, unclassified
LOC_Os11g08569Os.12282.1.S1_a_at10/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.24410.1.S1_s_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_x_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.31929.5.S1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7046.1.S1_at--730--911Chr11:4505533..4505557 (25 bp)
AGGCTGACTCATGCTTCTGTTCGCA
LOC_Os11g08536
OsAffx.7046.1.S1_at--792--6092Chr11:4505588..4505612 (25 bp)
GAGTCATCTTGACCCAATGTTGCAT
LOC_Os11g08536
OsAffx.7046.1.S1_at--625--692Chr11:4505611..4505635 (25 bp)
ATGAGGCGTCCGTGCAGCATTCCAT
LOC_Os11g08536
OsAffx.7046.1.S1_at--562--5892Chr11:4505662..4505686 (25 bp)
GAGCGGCTTCTCCTGTTTTTGTACT
LOC_Os11g08536
OsAffx.7046.1.S1_at--1046--6812Chr11:4505676..4505700 (25 bp)
GTTTTTGTACTTTCTTCTTTTGCAG
LOC_Os11g08536
OsAffx.7046.1.S1_at--908--8472Chr11:4505728..4505752 (25 bp)
TGGCGACGGATGTGCAGACTCAAGC
LOC_Os11g08536
OsAffx.7046.1.S1_at--610--2991Chr11:4505847..4505871 (25 bp)
AATGTTTGTCGTCCAAGCCGTGCTA
LOC_Os11g08536
OsAffx.7046.1.S1_at--46--4852Chr11:4505868..4505892 (25 bp)
GCTAAGGTGACAATTCCTGCCATCT
LOC_Os11g08536
OsAffx.7046.1.S1_at--938--1111Chr11:4505910..4505934 (25 bp)
AGTGAGCGCCTCCTTTGCAAGAAGC
LOC_Os11g08536
OsAffx.7046.1.S1_at--361--2431Chr11:4505945..4505969 (25 bp)
AAAACCTGAAACTCTTGCTCAAGAA
LOC_Os11g08536
OsAffx.7046.1.S1_at--144--8572Chr11:4505995..4506019 (25 bp)
TGGATGATCATGCTTCCTTTGATGA
LOC_Os11g08536
Target Sequence 
AGGCTGACTCATGCTTCTGTTCGCAGGGGCAGGGAGATGTCCTCTCCGTTTTGGAGAGTCATCTTGACCCAATGTTGCAT
GAGGCGTCCGTGCAGCATTCCATCTACTCACCAGACAATGCTTCTCCCCGAGCGGCTTCTCCTGTTTTTGTACTTTCTTC
TTTTGCAGAACAGGGGACTCCGCATTCCAATGGGGTGGCGACGGATGTGCAGACTCAAGCAGGGCCGATGGCGAGGCAGG
GCAACAGGGTGGAAGAGTTCTTCTCTGCTCTCTCGACTCCTCTTCAGCAGCCGCTGCTACCTGCTCCCGACGTCAATGTT
TGTCGTCCAAGCCGTGCTAAGGTGACAATTCCTGCCATCTCCTCGGCGCAATGCCACAGTGAGCGCCTCCTTTGCAAGAA
GCGGGCGGGAGCAAAACCTGAAACTCTTGCTCAAGAAATCCTGTCAAATAAGTTTGGCATTTTGGATGATCATGCTTCCT
TTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis