Browse Element(s) Details


Os.31929.5.S1_at

Description gb:NM_183978.1
DB_XREF= gi:34895083
GEN=B1151H08.14
TID=Os.31929.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1168H06.16 (B1168H06.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1151H08.14 (B1151H08.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g381701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g085691/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38130NANA6+22575955..22577194His Kinase A domain containing protein
LOC_Os06g38140OsAffx.31070.2.S1_x_at11/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31070.2.S1_at11/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31069.1.S1_x_at1/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31070.1.S1_x_at1/116+22589634..22592651hypothetical protein
LOC_Os06g38150OsAffx.15814.1.S1_at11/116+22593566..22593928hypothetical protein
LOC_Os06g38160OsAffx.15815.1.S1_at11/116+22597674..22600260Legume lectins beta domain containing protein
LOC_Os06g38170Os.7582.1.S1_at1/116+22600739..22602679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38170Os.31929.5.S1_at1/116+22600739..22602679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38180NANA6+22604602..22605860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38190OsAffx.15816.1.S1_at10/116+22610892..22612283hypothetical protein
LOC_Os06g38200Os.52817.1.S1_at11/116+22613002..22615284expressed protein
LOC_Os06g38210Os.12027.1.S1_a_at6/116+22615947..22616270expressed protein
LOC_Os06g38220Os.43124.1.S1_at1/116+22618319..22620632retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38230OsAffx.27985.1.S1_at11/116+22622060..22624605hypothetical protein
LOC_Os06g38240NANA6+22626393..22629965retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31929.5.S1_at--283--3112Chr01:13666754..13666778 (25 bp)
AATATGTAGATTCGGTCCTATACCC
NONE
Os.31929.5.S1_at--215--10551Chr01:13668318..13668342 (25 bp)
TTCATCTCCTTCGAAGTCTTCAAAC
NONE
Os.31929.5.S1_at--598--6519Chr12:1476438..1476462 (25 bp)
ATGACGTCTTCAAAATTGCTTCCCA
NONE
Os.31929.5.S1_at--93--728Chr12:20377158..20377182 (25 bp)
ATTGCTTCCCATCAAGGTCTTGTAA
NONE
Os.31929.5.S1_at--678--7812Chr01:13668380..13668404 (25 bp)
GGTCTTGTAATCTTCAACCGACATG
NONE
Os.31929.5.S1_at--693--87136Chr12:15287221..15287244 (24 bp)
TGTCGTCTTGCTTGAAATACCGAAG
NONE
Os.31929.5.S1_at--457--65333Chr12:15287253..15287276 (24 bp)
GATTTACCTCAACTGGCAAAACGGC
NONE
Os.31929.5.S1_at--538--10431Chr01:13668493..13668514 (22 bp)
TTATCCATTAGCCTTCGTACAACTC
NONE
Os.31929.5.S1_at--560--7031NONE
GTACAACTCTTTGCCCGAGATCGGT
NONE
Os.31929.5.S1_at--505--1931Chr01:13669093..13669117 (25 bp)
ACGGAATGCCGATCAGACCGGCCAT
NONE
Os.31929.5.S1_at--54--653Chr07:26489482..26489515 (25 bp)
ATGCAGAGCCGGTCAGACCACTGGT
NONE
Target Sequence 
AATATGTAGATTCGGTCCTATACCCGCAAGGATTTGAGGTGCCCAACTTCACGAAATTCACAGGTGAGAATGCTATGACT
ACAATGGAGCATATCGGCCGCTTTATTGATCAATGTGAAACCAAAGGAAACACGAAACATGCCTTCCCGAGCAAGGAAAC
CCGAGATCCGACGAAAACAGACTCGGACTCGGACCCTGACGGTCTGACCGCCTACATACCTGCGTGTCTTCATCTCCTTC
GAAGTCTTCAAACGCTTGTCAATGACGTCTTCAAAATTGCTTCCCATCAAGGTCTTGTAATCTTCAACCGACATGTCGTC
TTGCTTGAAATACCGAAGAGAGCCAAGATTTACCTCAACTGGCAAAACGGCAATTTCAACAATGTTTTATTACTCGACTC
GGCTTATCCATTAGCCTTCGTACAACTCTTTGCCCGAGATCGGTCAGACCGGCCACGGAATGCCGATCAGACCGGCCATG
CAGAGCCGGTCAGACCACTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31929.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis