Browse Element(s) Details


OsAffx.15814.1.S1_at

Description tigr:9634.m03634
TID=OsAffx.15814.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3815011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38120OsAffx.15812.1.S1_at11/116+22565778..22570505expressed protein
LOC_Os06g38130NANA6+22575955..22577194His Kinase A domain containing protein
LOC_Os06g38140OsAffx.31070.2.S1_x_at11/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31070.2.S1_at11/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31069.1.S1_x_at1/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31070.1.S1_x_at1/116+22589634..22592651hypothetical protein
LOC_Os06g38150OsAffx.15814.1.S1_at11/116+22593566..22593928hypothetical protein
LOC_Os06g38160OsAffx.15815.1.S1_at11/116+22597674..22600260Legume lectins beta domain containing protein
LOC_Os06g38170Os.7582.1.S1_at1/116+22600739..22602679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38170Os.31929.5.S1_at1/116+22600739..22602679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38180NANA6+22604602..22605860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38190OsAffx.15816.1.S1_at10/116+22610892..22612283hypothetical protein
LOC_Os06g38200Os.52817.1.S1_at11/116+22613002..22615284expressed protein
LOC_Os06g38210Os.12027.1.S1_a_at6/116+22615947..22616270expressed protein
LOC_Os06g38220Os.43124.1.S1_at1/116+22618319..22620632retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15814.1.S1_at--501--871Chr06:22593606..22593630 (25 bp)
ATGGCGAGCATCCTCTTCCAGCTGG
LOC_Os06g38150
OsAffx.15814.1.S1_at--446--572Chr12:18555777..18555800 (24 bp)
ATCCTCTTCCAGCTGGAGACGGGGA
NONE
OsAffx.15814.1.S1_at--281--7651Chr06:22593636..22593660 (25 bp)
GGGAGGTGCACGACCTTCTACTCGC
LOC_Os06g38150
OsAffx.15814.1.S1_at--94--8031Chr06:22593637..22593661 (25 bp)
GGAGGTGCACGACCTTCTACTCGCC
LOC_Os06g38150
OsAffx.15814.1.S1_at--384--9911Chr06:22593654..22593678 (25 bp)
TACTCGCCCGTCAGCAGATCGTAGG
LOC_Os06g38150
OsAffx.15814.1.S1_at--1051--4531Chr06:22593659..22593683 (25 bp)
GCCCGTCAGCAGATCGTAGGCGAAG
LOC_Os06g38150
OsAffx.15814.1.S1_at--157--4251Chr06:22593661..22593685 (25 bp)
CCGTCAGCAGATCGTAGGCGAAGCT
LOC_Os06g38150
OsAffx.15814.1.S1_at--721--511Chr06:22593671..22593695 (25 bp)
ATCGTAGGCGAAGCTGAGCGCCGCC
LOC_Os06g38150
OsAffx.15814.1.S1_at--964--8911Chr06:22593685..22593709 (25 bp)
TGAGCGCCGCCGAACTGCTGATGAT
LOC_Os06g38150
OsAffx.15814.1.S1_at--5--5891Chr06:22593686..22593710 (25 bp)
GAGCGCCGCCGAACTGCTGATGATC
LOC_Os06g38150
OsAffx.15814.1.S1_at--828--4551Chr06:22593812..22593836 (25 bp)
GCCCACTCCCACGTGGAGAGGAGAG
LOC_Os06g38150
Target Sequence 
ATGGCGAGCATCCTCTTCCAGCTGGAGACGGGGAGGTGCACGACCTTCTACTCGCCCGTCAGCAGATCGTAGGCGAAGCT
GAGCGCCGCCGAACTGCTGATGATCTCCCCACCGCCCCGGCCGCCGAGCCTCGCCGCCTCGTCGCCAACCTCCCCGAGGC
CGGTCGCTGCCTCACCACCTCGTTGCCCGCCGCCACGCCGCCTCCCGCCCACTCCCACGTGGAGAGGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis