Browse Element(s) Details


OsAffx.15812.1.S1_at

Description tigr:9634.m03629
TID=OsAffx.15812.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3812011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38110OsAffx.5041.1.S1_s_at11/116+22549998..22550883expressed protein
LOC_Os06g38110OsAffx.5041.1.S1_at10/116+22549998..22550883expressed protein
LOC_Os06g38110Os.40406.1.A1_at7/116+22549998..22550883expressed protein
LOC_Os06g38120OsAffx.15812.1.S1_at11/116+22565778..22570505expressed protein
LOC_Os06g38130NANA6+22575955..22577194His Kinase A domain containing protein
LOC_Os06g38140OsAffx.31070.2.S1_x_at11/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31070.2.S1_at11/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31069.1.S1_x_at1/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31070.1.S1_x_at1/116+22589634..22592651hypothetical protein
LOC_Os06g38150OsAffx.15814.1.S1_at11/116+22593566..22593928hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15812.1.S1_at--963--9671Chr06:22569910..22569934 (25 bp)
TCACCTCGATGTTAAGCATGCTCCT
LOC_Os06g38120
OsAffx.15812.1.S1_at--332--1231Chr06:22569985..22570009 (25 bp)
AGTTCTTCGTCAGAGCTACTATCCC
LOC_Os06g38120
OsAffx.15812.1.S1_at--1144--8571Chr06:22570080..22570104 (25 bp)
TGGTACATGGTAGCCGCGTTCCTGA
LOC_Os06g38120
OsAffx.15812.1.S1_at--566--1471Chr06:22570159..22570183 (25 bp)
AGAATGCCGTGCGAGCTAGCCACAA
LOC_Os06g38120
OsAffx.15812.1.S1_at--931--9611Chr06:22570249..22570273 (25 bp)
TCATGGCGATCTTTGGAGGCTTTCT
LOC_Os06g38120
OsAffx.15812.1.S1_at--176--1311Chr06:22570300..22570324 (25 bp)
AGATGGTGGCCCTTAAGGTCTGCAT
LOC_Os06g38120
OsAffx.15812.1.S1_at--689--7171Chr06:22570317..22570341 (25 bp)
GTCTGCATGTTCTTATCGACCTCGG
LOC_Os06g38120
OsAffx.15812.1.S1_at--567--8751Chr06:22570366..22570390 (25 bp)
TGTACCTGACCATGCGACCGGGAGA
LOC_Os06g38120
OsAffx.15812.1.S1_at--824--8011Chr06:22570401..22570425 (25 bp)
GGAGGTACCTCCAAAGCGGCCATGA
LOC_Os06g38120
OsAffx.15812.1.S1_at--182--331Chr06:22570428..22570452 (25 bp)
ATACTGGCTTGGTCTGTCATGGTGT
LOC_Os06g38120
OsAffx.15812.1.S1_at--155--7131Chr06:22570443..22570467 (25 bp)
GTCATGGTGTTGCTTTCTGCAGCCG
LOC_Os06g38120
Target Sequence 
TCACCTCGATGTTAAGCATGCTCCTGATGATGCTGTGGATGAAGGTCCTGGAGAGCAAGAAACCGAAGCTCCGGGAGTTC
TTCGTCAGAGCTACTATCCCGCGTGCCAATGCGGCCCTTCTAGCCTTGCTCGCGATCGCCGCCTTCGCCGCGTCGTTTGG
GATCCTCAGGTGGTACATGGTAGCCGCGTTCCTGACTCTCGCCTTGGCTGCCACCGTCCAATTCGTCATCCAGCACTGCA
CCAGAGAGCAGAATGCCGTGCGAGCTAGCCACAACGAGACGCAGCTCAAGTGGATGGCGGACATGGCGAGCAAGACGACA
CCGTGGTCTCTGGGGATAGTCATGGCGATCTTTGGAGGCTTTCTTGGAGACGATGATAAAAGCAAGGACAAGATGGTGGC
CCTTAAGGTCTGCATGTTCTTATCGACCTCGGCGTTCACGTCGGGCCTTGGGCTCATGTACCTGACCATGCGACCGGGAG
AGTCAGCCAGAGGAGGTACCTCCAAAGCGGCCATGACCATACTGGCTTGGTCTGTCATGGTGTTGCTTTCTGCAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis