Browse Element(s) Details


Os.40406.1.A1_at

Description gb:CF332650
DB_XREF= gi:33813525
DB_XREF=JMT--01-D21.g1
CLONE=JMT--01-D21
TID=Os.40406.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40406 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g381107/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38090OsAffx.15809.1.S1_at11/116+22525690..22534533hypothetical protein
LOC_Os06g38090OsAffx.29062.1.S1_at1/116+22525690..22534533hypothetical protein
LOC_Os06g38100OsAffx.15810.1.S1_at10/116+22535603..22537238Protein kinase domain containing protein
LOC_Os06g38100OsAffx.23090.9.S1_x_at1/116+22535603..22537238Protein kinase domain containing protein
LOC_Os06g38110OsAffx.5041.1.S1_s_at11/116+22549998..22550883expressed protein
LOC_Os06g38110OsAffx.5041.1.S1_at10/116+22549998..22550883expressed protein
LOC_Os06g38110Os.40406.1.A1_at7/116+22549998..22550883expressed protein
LOC_Os06g38120OsAffx.15812.1.S1_at11/116+22565778..22570505expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40406.1.A1_at--1011--1831Chr06:22550424..22550448 (25 bp)
ACGCAACAGCTTTTCTTGTTAGCTT
LOC_Os06g38110
Os.40406.1.A1_at--144--10771Chr06:22550439..22550463 (25 bp)
TTGTTAGCTTAAGATTTTGGTCATC
LOC_Os06g38110
Os.40406.1.A1_at--446--10251Chr06:22550454..22550478 (25 bp)
TTTGGTCATCTTGTATTCCTTCCAT
LOC_Os06g38110
Os.40406.1.A1_at--419--431Chr06:22550461..22550485 (25 bp)
ATCTTGTATTCCTTCCATCCTAAAG
LOC_Os06g38110
Os.40406.1.A1_at--26--9251Chr06:22550470..22550494 (25 bp)
TCCTTCCATCCTAAAGGGTTTCTGT
LOC_Os06g38110
Os.40406.1.A1_at--1140--10351Chr06:22550498..22550522 (25 bp)
TTTTTTCCCTGCAGGGAGAGCAGCT
LOC_Os06g38110
Os.40406.1.A1_at--794--10651Chr06:22550502..22550526 (25 bp)
TTCCCTGCAGGGAGAGCAGCTATGC
LOC_Os06g38110
Os.40406.1.A1_at--649--311Chr06:22550869..22550893 (25 bp)
ATACCTGAGCGTTGACCCCTATAGC
NONE
Os.40406.1.A1_at--643--6651Chr06:22550879..22550903 (25 bp)
GTTGACCCCTATAGCCTACTTAGAA
NONE
Os.40406.1.A1_at--597--291Chr06:22550889..22550913 (25 bp)
ATAGCCTACTTAGAACCCTGTTTAG
NONE
Os.40406.1.A1_at--606--4431Chr06:22550892..22550916 (25 bp)
GCCTACTTAGAACCCTGTTTAGATG
NONE
Target Sequence 
ACGCAACAGCTTTTCTTGTTAGCTTAAGATTTTGGTCATCTTGTATTCCTTCCATCCTAAAGGGTTTCTGTTTTTTTTTT
CCCTGCAGGGAGAGCAGCTATGCCGGAAANCCCAACGACGCCCAGCNGGAATCTGGAGCGCGGCATCCTGGTGACCATCT
TCAGCTCCGCCGTTCTAATGGACTACTTCGTCGACGGGCCTCCATGGACGGAAGGGTCCAACGGCGGCCTGGTCTTCACC
GCCACGCTGCTGCTCGCGTTCGCGACCTTCATCTGCGGCAGCGCCCTCATGCTGGTCGGCCTCGCCGGGCGCCTCTTCTC
CGGCGGCCGCCGCGTCGCCGTCGTCTCCATGTGCCTCGTCGTAGCTCTATCCGCGCAAACCTTGCTTGGTCTGCTCATCA
GCGCGTTCCCGTACGTGCAAGACCTCACCAGTCTTTGCCGGTTGTGCATACCTGAGCGTTGACCCCTATAGCCTACTTAG
AACCCTGTTTAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40406.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis